View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18158_low_5 (Length: 391)
Name: NF18158_low_5
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18158_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 376
Target Start/End: Original strand, 34625979 - 34626351
Alignment:
| Q |
13 |
caaaggagaactaaattttgaaactgagttgttgatgttgtctg---------aactatttagacaaggcattgaagagaagaaatagcttgaattgttt |
103 |
Q |
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| T |
34625979 |
caaaggagaactaaattttgaaactgagttgttgatgttgtctgaaaattctgaactatttagacaaggcattgaagagaagaaatagcttgaattgttt |
34626078 |
T |
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| Q |
104 |
ccaaactgattctgttcaaattgtaatagacttggctgataataatttatcaaacttgaattgtagtataatggatcaaaatccaatgttggattattca |
203 |
Q |
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| T |
34626079 |
ccaaactgattctgttcaaattgtaatagacttggctgataataatttatcaaacttgaattgtagtataatggatcaaaatccaatgttggattattca |
34626178 |
T |
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| Q |
204 |
taagaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaagggattctgagtattcctgtgagga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
34626179 |
taagaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaagggattctgagtagtcatgtgagga |
34626278 |
T |
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| Q |
304 |
ttctagcattgtgtgtgtagctagaattctttgaggttgagagtgagacagtggcattatcattgatggtttt |
376 |
Q |
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| T |
34626279 |
ttctagcattgtgtgtgtagctagaattctttgaggttgagagtgagacagtggcattatcattgatggtttt |
34626351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 74; Significance: 8e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 197 - 326
Target Start/End: Original strand, 39674595 - 39674724
Alignment:
| Q |
197 |
ttattcataagaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaagggattctgagtattcct |
296 |
Q |
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| T |
39674595 |
ttattcacgagaaattttcttggggcttctgttcaagctaatccaccgatattatagtgattgatcaaatcacccattaaaagtgcttctgaatattcct |
39674694 |
T |
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| Q |
297 |
gtgaggattctagcattgtgtgtgtagcta |
326 |
Q |
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| T |
39674695 |
gtgaggattctaacattgtgtgtgtagcta |
39674724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 206 - 279
Target Start/End: Complemental strand, 19968497 - 19968424
Alignment:
| Q |
206 |
agaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaag |
279 |
Q |
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| T |
19968497 |
agaaattttcttgaagcttttgttaaaactatacaaccaatattatagtgataattcaaatcactcattagaag |
19968424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 63 - 266
Target Start/End: Complemental strand, 44667214 - 44667014
Alignment:
| Q |
63 |
ttagacaaggcattgaagagaagaaatagcttgaattgtttccaaactgat---tctgttcaaattgtaatagacttggctgataataatttatcaaact |
159 |
Q |
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||||| |||||||||||||||| || ||| | |||||| |||||||||| | |||||||||||||| |||||||| |||||||||| |||| ||| |
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| T |
44667214 |
ttagaaaaggcattgaagagaaaaattagttggaattgattccaaactggtggttctgttcaaattgtcttagacttgagtgataataatagatcacact |
44667115 |
T |
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| Q |
160 |
tgaattgtagtataatggatcaaaatccaatgttggattattcataagaaatattcttgaagcttctgttaaagctaatccaccaatattatagtgatta |
259 |
Q |
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| T |
44667114 |
taaattgtaggacaatg------aatccaatgatgacttattcatgagaaatttccttgaagcctccgttaaagctaaaccaccaatactatagtgataa |
44667021 |
T |
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| Q |
260 |
atcaaat |
266 |
Q |
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|||||| |
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| T |
44667020 |
ttcaaat |
44667014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 278
Target Start/End: Original strand, 40037494 - 40037578
Alignment:
| Q |
197 |
ttattcataagaaatattcttgaagcttct---gttaaagctaatccaccaatattatagtgattaatcaaatcactcattagaa |
278 |
Q |
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|||||||||||| || ||| ||||||| || ||||||||||| ||||||||||||||||||| | ||||||| |||||||||| |
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| T |
40037494 |
ttattcataagagattttcctgaagctcctcctgttaaagctaaaccaccaatattatagtgataattcaaatcgctcattagaa |
40037578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 330 - 376
Target Start/End: Complemental strand, 51044875 - 51044829
Alignment:
| Q |
330 |
ttctttgaggttgagagtgagacagtggcattatcattgatggtttt |
376 |
Q |
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| T |
51044875 |
ttctttgaggttgaggttgagacagtggcattatcattgatggtttt |
51044829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 51045009 - 51044955
Alignment:
| Q |
76 |
tgaagagaagaaatagcttgaattgtttccaaactgattctgttcaaattgtaat |
130 |
Q |
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| T |
51045009 |
tgaagagaagaaatagcttgaattggttccaaattggttcagttcaaattgtaat |
51044955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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