View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18158_low_9 (Length: 284)
Name: NF18158_low_9
Description: NF18158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18158_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 33530853 - 33530580
Alignment:
| Q |
11 |
atcatcaaatgctaacnnnnnnngaacaccaattaaggaaataagggaccacatgttaaaaagtatactactagtttgatgctaagtgctgaaaatcagg |
110 |
Q |
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| T |
33530853 |
atcatcaaatgctaacaaaaaaagaacaccaattaaggaaataagggaccacatgttaaaaagtatactactagtttgatgctaagtgctgaaaatcagg |
33530754 |
T |
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| Q |
111 |
ctttcccttttttgacaacaaattcatctattttatgaatttaattgtgatagtgttgcatattgacgaatacaaataattgaaactcattcagtgtgac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33530753 |
ctttcccttttttgacaacaaattcatctattttatgaatttaattgtgatagtgttgcatattgacgaatacaaataattgaaactcattcggtgtgac |
33530654 |
T |
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| Q |
211 |
cctaagttgttttgcatttttatgtggtgacaggtttgaggatgccgtgacagcatcacagaaagcggttaaac |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33530653 |
cctaagttgttttgcatttttatgtggtgacaggtttgaggatgccgtgacagcatcacagaaagcggctaaac |
33530580 |
T |
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