View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_high_10 (Length: 389)
Name: NF18159_high_10
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 44590218 - 44590514
Alignment:
| Q |
1 |
atgtagttactacattcacatacctcgtaggagaagtcgacgtgtccaggagtatctatcaaatttaagcaatatggttcattttcaaacacataacgca |
100 |
Q |
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| T |
44590218 |
atgtagttactacattcacatacctcgtaggagaagtcgacgtgtccaggagtatctatcaaatttaagcaatatggttcattttcaaacacataacgca |
44590317 |
T |
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| Q |
101 |
ttcgagctgcctgtcatgatcaaaatcagattaatactttctccaccattgtatacaaattt-aaattctcaaaaacatttgaaaatcatattttcccaa |
199 |
Q |
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| T |
44590318 |
ttcgagcagcctgtcatgatcaaaatcagattaatactttctccaccattgtatacaaatttaaaattctcaaaaacatttgaaaatcatattttcccaa |
44590417 |
T |
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| Q |
200 |
acacattgnnnnnnntccatctctcttaacaacatttaaaacaggatgctagtttggatattttgacacacaaatttgacatcaactgaatggttaa |
296 |
Q |
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| T |
44590418 |
acaaaatgaaaaaaatccatctctcttaacaacatttaaaacaggatgctagtttggatattttgacacacaaatttgacatcaactgaatggttaa |
44590514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 44590582 - 44590631
Alignment:
| Q |
322 |
tatatatataatgatgaagataagaaaaggaaaacatgaacctgaagctt |
371 |
Q |
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| T |
44590582 |
tatatatataatgatgaagataagaaaaggaaaacatgaacctgaagctt |
44590631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Original strand, 7232564 - 7232597
Alignment:
| Q |
295 |
aacacaattaaccaccattttcacgtgtatatat |
328 |
Q |
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| T |
7232564 |
aacacaattaaccaccattttcaagtgtatatat |
7232597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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