View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18159_high_8 (Length: 424)
Name: NF18159_high_8
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 177 - 406
Target Start/End: Complemental strand, 7640312 - 7640085
Alignment:
| Q |
177 |
gcagttgatcttgctttatcctctaaaaggcaaatggannnnnnnatcaaactacacaaacatttcctacacttcatatgcatgcttaaaaatatacact |
276 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7640312 |
gcagtttatcttgctttatcctctaaatggcaaatggatttttttctcaaactacacaaacatttcctacacttcatatgcatgcttaaaaatatacact |
7640213 |
T |
|
| Q |
277 |
tctacaaacttcaagcttattttctataaaatctcactacatggtaaagaattcgacttcagggaagcaaaatttgcaataatatctatatataaactga |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7640212 |
tctacaaacttcaagcttattttctataaaatctcactacatgg--aagaattcgacttcagggaaacaaaatttgcaataatatctatatataaactga |
7640115 |
T |
|
| Q |
377 |
ttccattcacaatgtcgtctatgctcaata |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7640114 |
ttccattcacaatgtcgtctatgctcaata |
7640085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 391
Target Start/End: Complemental strand, 7633379 - 7633341
Alignment:
| Q |
353 |
caataatatctatatataaactgattccattcacaatgt |
391 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
7633379 |
caataatatctatatataaactgaatccattcagaatgt |
7633341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University