View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_1 (Length: 711)

Name: NF18159_low_1
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_1
NF18159_low_1
[»] chr3 (28 HSPs)
chr3 (24-358)||(22437710-22438045)
chr3 (70-232)||(22445661-22445821)
chr3 (356-460)||(22359368-22359472)
chr3 (356-460)||(22369270-22369374)
chr3 (356-460)||(22438082-22438186)
chr3 (356-464)||(22446408-22446516)
chr3 (227-358)||(22446251-22446371)
chr3 (624-692)||(22448953-22449021)
chr3 (231-355)||(22449273-22449392)
chr3 (233-358)||(22449048-22449169)
chr3 (9-71)||(22445560-22445622)
chr3 (482-600)||(22438551-22438664)
chr3 (235-358)||(22439964-22440082)
chr3 (624-692)||(22438038-22438106)
chr3 (625-692)||(22440075-22440142)
chr3 (624-692)||(22446364-22446432)
chr3 (624-692)||(22449209-22449277)
chr3 (9-74)||(22368979-22369045)
chr3 (482-528)||(22446764-22446810)
chr3 (24-74)||(22359093-22359143)
chr3 (624-677)||(22359339-22359392)
chr3 (624-677)||(22369241-22369294)
chr3 (543-591)||(7272562-7272610)
chr3 (10-66)||(22371381-22371436)
chr3 (321-358)||(22359290-22359327)
chr3 (321-358)||(22369192-22369229)
chr3 (543-588)||(22446817-22446862)
chr3 (543-588)||(23626248-23626293)
[»] chr2 (8 HSPs)
chr2 (543-589)||(38358268-38358314)
chr2 (543-588)||(25641086-25641132)
chr2 (543-580)||(7318404-7318441)
chr2 (543-580)||(9468539-9468576)
chr2 (543-580)||(11093978-11094015)
chr2 (543-588)||(19272663-19272708)
chr2 (543-592)||(31122282-31122331)
chr2 (543-588)||(38127764-38127809)
[»] chr6 (4 HSPs)
chr6 (543-588)||(9222655-9222700)
chr6 (543-588)||(18591122-18591167)
chr6 (543-589)||(20504420-20504466)
chr6 (543-588)||(8237987-8238032)
[»] chr4 (6 HSPs)
chr4 (543-584)||(17494565-17494606)
chr4 (543-588)||(28951117-28951162)
chr4 (543-589)||(5514358-5514404)
chr4 (543-588)||(29104160-29104205)
chr4 (543-588)||(31226510-31226555)
chr4 (543-588)||(51353444-51353489)
[»] chr1 (4 HSPs)
chr1 (543-588)||(21853561-21853606)
chr1 (543-581)||(11336291-11336329)
chr1 (543-581)||(11494310-11494348)
chr1 (543-588)||(1824516-1824561)
[»] chr7 (4 HSPs)
chr7 (543-588)||(5864774-5864820)
chr7 (543-589)||(24478025-24478071)
chr7 (543-580)||(24233629-24233666)
chr7 (543-580)||(38608003-38608040)
[»] scaffold0430 (1 HSPs)
scaffold0430 (543-588)||(12812-12857)
[»] scaffold0179 (1 HSPs)
scaffold0179 (543-580)||(2741-2778)
[»] scaffold0022 (1 HSPs)
scaffold0022 (543-588)||(63360-63405)
[»] chr8 (2 HSPs)
chr8 (543-588)||(25653705-25653750)
chr8 (543-588)||(34227328-34227373)
[»] chr5 (2 HSPs)
chr5 (543-588)||(4413928-4413973)
chr5 (543-588)||(12148237-12148282)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 24 - 358
Target Start/End: Original strand, 22437710 - 22438045
Alignment:
Q  24 tgaggaaaaagctattagtccttcaagattatataacataaagatcattga------gttcatgtgaattattgagctcttagtgtttattaattaaccg 117  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  22437710 tgaggaaaaagctcatagtccttcaagattatataacataaagatcattgacttcgagttcatgtgaattattgagctcttagtgtttattaattaaccg 22437809  T
Q  118 gtagttaaacaatgcatctcaatcttagttttatttannnnnnncctcagatcacaatctcagtagttaaataattctaaagattgtcaactctcctctt 217  Q
    |||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||| |        
T  22437810 gtagttaaacaatgcatctcaatcttagttttatttatttttttccacagatcacaatctcagtagttaaataattctaaagattgtcaactcttc---- 22437905  T
Q  218 gagtggggataaataatttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgtt 317  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22437906 -agtggggataaataatttagttttgaatgggcaattggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgtt 22438004  T
Q  318 aacttaactctggttaaagattgtttcatccatggtttaag 358  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  22438005 aacttaactctggttaaagattgtttcaaccatggtttaag 22438045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 70 - 232
Target Start/End: Original strand, 22445661 - 22445821
Alignment:
Q  70 attgagttcatgtgaattattgagctcttagtgtttattaattaaccggtagttaaacaatgcatctcaatcttagttttatttannnnnnncctcagat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||       || |||||    
T  22445661 attgagttcatgtgaattattgagctcttagtgtttattaattaacctgtagttaaacaatgcatctcaatcttagttatatttatttttttccacagat 22445760  T
Q  170 cacaatctcagtagttaaataattctaaagattgtcaactctcctcttgagtggggataaata 232  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||    
T  22445761 cacaatctcagtagttaaataattctaaagattgtcaactct--tcttcggtggggataaata 22445821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 22359368 - 22359472
Alignment:
Q  356 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 455  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22359368 aagagaagactaactttgttaattagagttaatactctcaatcaactaaacctagatccgtggctgattagctgtaccattttgaaaaaataagggttaa 22359467  T
Q  456 aaata 460  Q
    |||||    
T  22359468 aaata 22359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 22369270 - 22369374
Alignment:
Q  356 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 455  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22369270 aagaaaagactaactttgttaattagagttaatactctcaatcaactaaacctagatccgtggctgattagctgtaccattttgaaaaaataagggttaa 22369369  T
Q  456 aaata 460  Q
    |||||    
T  22369370 aaata 22369374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 356 - 460
Target Start/End: Original strand, 22438082 - 22438186
Alignment:
Q  356 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 455  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22438082 aagagaagactaactttgttaattagagttaatactctaaatcaactaaacctagatccgtggctgattagctgtaccattttgaaaaaataagggttaa 22438181  T
Q  456 aaata 460  Q
     ||||    
T  22438182 gaata 22438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 356 - 464
Target Start/End: Original strand, 22446408 - 22446516
Alignment:
Q  356 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 455  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22446408 aagaaaagactaactttgttaattagaattaatactctcaatctactatacctagatccatggctgattagcggtaccattttgaaaaaataagggttaa 22446507  T
Q  456 aaataattt 464  Q
    |||||||||    
T  22446508 aaataattt 22446516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 227 - 358
Target Start/End: Original strand, 22446251 - 22446371
Alignment:
Q  227 taaataatttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaact 326  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||           
T  22446251 taaataatttagttttgaatgggc----ggctatgcaatgtgaggtgtagtttaaccattttaaagacttggtcaaaagaaaaactttgttaa------- 22446339  T
Q  327 ctggttaaagattgtttcatccatggtttaag 358  Q
    ||||||||||||||||||| ||||||||||||    
T  22446340 ctggttaaagattgtttcaaccatggtttaag 22446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 624 - 692
Target Start/End: Original strand, 22448953 - 22449021
Alignment:
Q  624 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaacc 692  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22448953 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaacc 22449021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 22449392 - 22449273
Alignment:
Q  231 taatttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctgg 330  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |     ||    
T  22449392 taatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtgttagtcaaaagaaagactttgttaactca-----gg 22449298  T
Q  331 ttaaagattgtttcatccatggttt 355  Q
    ||||||||| ||||| |||||||||    
T  22449297 ttaaagattatttcaaccatggttt 22449273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 233 - 358
Target Start/End: Complemental strand, 22449169 - 22449048
Alignment:
Q  233 atttagttttgaatgggcaa-taggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctggt 331  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |     |||    
T  22449169 atttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcaaaagaaagactttgttaactca-----ggt 22449075  T
Q  332 taaagattgtttcatccatggtttaag 358  Q
    |||||||| ||||| ||||||| ||||    
T  22449074 taaagattatttcaaccatggtgtaag 22449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 22445560 - 22445622
Alignment:
Q  9 gagtgagatgaatgatgaggaaaaagctattagtccttcaagattatataacataaagatcat 71  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  22445560 gagtgagatgaatgacgaggacaaagctattagtccttcaagattatataacataaagatcat 22445622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 600
Target Start/End: Original strand, 22438551 - 22438664
Alignment:
Q  482 acggaatatagagaggaatgaaagtaaagaccgaattaattccgtctcttgaatnnnnnnnggttaatagtgttttaatccctataatataggtcatttc 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     |||       ||||||||||| ||||| | ||||||||||| |||||||    
T  22438551 acggaatatagagaggaatgaaagtaaagaccgaattaattccgtc-----aataaaaaaaggttaatagtgctttaacctctataatatagatcatttc 22438645  T
Q  582 tggttttttctatcaaatg 600  Q
    ||||||| ||||| |||||    
T  22438646 tggttttctctatgaaatg 22438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 235 - 358
Target Start/End: Original strand, 22439964 - 22440082
Alignment:
Q  235 ttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctggttaa 334  Q
    |||||||||||| | |||| ||||||||||||||||||    |||||||||||||||| ||| | |||||||||||||||||||||| |     ||||||    
T  22439964 ttagttttgaatcgccaattggctatgcaatgtgaggtaatctttaaccattttaaagtcttggacaaaagaaagactttgttaactca-----ggttaa 22440058  T
Q  335 agattgtttcatccatggtttaag 358  Q
    ||||||||||  ||||||||||||    
T  22440059 agattgtttccaccatggtttaag 22440082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 624 - 692
Target Start/End: Complemental strand, 22438106 - 22438038
Alignment:
Q  624 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaacc 692  Q
    ||||||| |||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||    
T  22438106 taattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattaaacttaaacc 22438038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 625 - 692
Target Start/End: Complemental strand, 22440142 - 22440075
Alignment:
Q  625 aattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaacc 692  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  22440142 aattaacaaagctaatcttctctttaactagtgattgttgaatcagttgggattattaaacttaaacc 22440075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 624 - 692
Target Start/End: Complemental strand, 22446432 - 22446364
Alignment:
Q  624 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaacc 692  Q
    ||||||| |||| ||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||    
T  22446432 taattaacaaagttagtcttttctttaactagtgacagttgaatcaatttggagtattgaacttaaacc 22446364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 624 - 692
Target Start/End: Original strand, 22449209 - 22449277
Alignment:
Q  624 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaacc 692  Q
    ||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||    
T  22449209 taattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtatagaactgaaacc 22449277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 22368979 - 22369045
Alignment:
Q  9 gagtgagat-gaatgatgaggaaaaagctattagtccttcaagattatataacataaagatcattga 74  Q
    ||||||||| ||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  22368979 gagtgagattgaatggtgaggaaaaagctcatagtccttcaagattatatagcataaagatcattga 22369045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 482 - 528
Target Start/End: Original strand, 22446764 - 22446810
Alignment:
Q  482 acggaatatagagaggaatgaaagtaaagaccgaattaattccgtct 528  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  22446764 acggaatatagagaggaatgaaagtaaaggccgaattaattccgtct 22446810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Original strand, 22359093 - 22359143
Alignment:
Q  24 tgaggaaaaagctattagtccttcaagattatataacataaagatcattga 74  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  22359093 tgaggaaaaagctcatagtccttcaagattatatagcataaagatcattga 22359143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 624 - 677
Target Start/End: Complemental strand, 22359392 - 22359339
Alignment:
Q  624 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggag 677  Q
    ||||||| |||| ||||||||||||||||||||||  |||||||||||||||||    
T  22359392 taattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggag 22359339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 677
Target Start/End: Complemental strand, 22369294 - 22369241
Alignment:
Q  624 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggag 677  Q
    ||||||| |||| ||||||| ||||||||||||||  |||||||||||||||||    
T  22369294 taattaacaaagttagtcttttctttaactagtgacagttgaatcaattgggag 22369241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 591
Target Start/End: Original strand, 7272562 - 7272610
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 591  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||||||    
T  7272562 ggttaatagtattttaccccctctaatataggtcatttctggttttttc 7272610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 22371381 - 22371436
Alignment:
Q  10 agtgagatgaatgatgaggaaaaagctattagtccttcaaga-ttatataacataaag 66  Q
    |||||||||||||||||||  |||||||||||||||||| || ||||||| |||||||    
T  22371381 agtgagatgaatgatgagg--aaagctattagtccttcatgatttatatagcataaag 22371436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 22359290 - 22359327
Alignment:
Q  321 ttaactctggttaaagattgtttcatccatggtttaag 358  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  22359290 ttaactcaggttaaagattgtttcaaccatggtttaag 22359327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 321 - 358
Target Start/End: Original strand, 22369192 - 22369229
Alignment:
Q  321 ttaactctggttaaagattgtttcatccatggtttaag 358  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  22369192 ttaactcaggttaaagattgtttcaaccatggtttaag 22369229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 22446817 - 22446862
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||  ||||| |||||||||||||||||||||| |||||    
T  22446817 ggttaatagtactttaacccctataatataggtcatttctagtttt 22446862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 23626293 - 23626248
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  23626293 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 23626248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 38358268 - 38358314
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggttttt 589  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  38358268 ggttaatagtgttttactccctgtaataaaggtcatttctggttttt 38358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 25641132 - 25641086
Alignment:
Q  543 ggttaatagtgttttaatccc-tataatataggtcatttctggtttt 588  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  25641132 ggttaatagtgtttttatcccctataatataagtcatttctggtttt 25641086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 7318441 - 7318404
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcattt 580  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  7318441 ggttaatagtgttttatcccctataatataggtcattt 7318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 9468576 - 9468539
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcattt 580  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  9468576 ggttaatagtgttttacaccctataatataggtcattt 9468539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 580
Target Start/End: Original strand, 11093978 - 11094015
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcattt 580  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  11093978 ggttaatagtgttttaccccctataatataggtcattt 11094015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 19272663 - 19272708
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  19272663 ggttaatagtgttttatcccctgtaatataggtcatttccggtttt 19272708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 592
Target Start/End: Complemental strand, 31122331 - 31122282
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggttttttct 592  Q
    ||||||||||||||||  || |||||||||||||||||  ||||||||||    
T  31122331 ggttaatagtgttttaccccttataatataggtcattttcggttttttct 31122282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 38127764 - 38127809
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  38127764 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 38127809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 9222700 - 9222655
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||    
T  9222700 ggttaatagtgttttaccccctataatataggacatttctggtttt 9222655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 18591122 - 18591167
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  18591122 ggttaatagtgttttatcccctataatataggtcatttccggtttt 18591167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 589
Target Start/End: Complemental strand, 20504466 - 20504420
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggttttt 589  Q
    ||||||||||||||||  || | ||||||||||||||||||||||||    
T  20504466 ggttaatagtgttttaccccatgtaatataggtcatttctggttttt 20504420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 8238032 - 8237987
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  8238032 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 8237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 584
Target Start/End: Complemental strand, 17494606 - 17494565
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctgg 584  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  17494606 ggttaatagtgttttaacccctgtaatataggtcatttctgg 17494565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 28951162 - 28951117
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||    
T  28951162 ggttaaaagtgttttaccccctataatataggtcatttctggtttt 28951117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 5514358 - 5514404
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggttttt 589  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||    
T  5514358 ggttaatagtattttactccctataatataggtcattttcggttttt 5514404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 29104160 - 29104205
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  29104160 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 29104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 31226555 - 31226510
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  31226555 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 31226510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 51353489 - 51353444
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||| ||||  |||| |||||||||||||||||||||||    
T  51353489 ggttaatagtgatttaccccctgtaatataggtcatttctggtttt 51353444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 21853561 - 21853606
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  21853561 ggttaatagtgttttaccccctataatataggtcatttccggtttt 21853606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 11336291 - 11336329
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttc 581  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11336291 ggttaatagtgttttatcccctataatataggtcatttc 11336329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 581
Target Start/End: Original strand, 11494310 - 11494348
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttc 581  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11494310 ggttaatagtgttttatcccctataatataggtcatttc 11494348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 1824561 - 1824516
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||| | |||| |||||||||||||||| ||||||    
T  1824561 ggttaatagtgttttcacccctgtaatataggtcatttccggtttt 1824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 5864820 - 5864774
Alignment:
Q  543 ggttaatagtgttttaatccc-tataatataggtcatttctggtttt 588  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  5864820 ggttaatagtgttttactcccctataatataggtcatttccggtttt 5864774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 589
Target Start/End: Original strand, 24478025 - 24478071
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggttttt 589  Q
    ||||||||||||||||  |||| |||||||||||||||| |||||||    
T  24478025 ggttaatagtgttttaccccctgtaatataggtcatttccggttttt 24478071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 24233666 - 24233629
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcattt 580  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  24233666 ggttaatagtgttttaccccctataatataggtcattt 24233629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 38608040 - 38608003
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcattt 580  Q
    |||||||||||||||  |||||||||||||||||||||    
T  38608040 ggttaatagtgtttttctccctataatataggtcattt 38608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 12857 - 12812
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  12857 ggttaatagtgttttaccccctttaatataggtcatttccggtttt 12812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 580
Target Start/End: Complemental strand, 2778 - 2741
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcattt 580  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  2778 ggttaatagtgttttaccccctataatataggtcattt 2741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 63405 - 63360
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  63405 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 63360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 25653705 - 25653750
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||    
T  25653705 ggttaatagtgttttaccccctgtaatataggtcatttttggtttt 25653750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 34227328 - 34227373
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  34227328 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 34227373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Original strand, 4413928 - 4413973
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  4413928 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 4413973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 588
Target Start/End: Complemental strand, 12148282 - 12148237
Alignment:
Q  543 ggttaatagtgttttaatccctataatataggtcatttctggtttt 588  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  12148282 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 12148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University