View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_10 (Length: 421)
Name: NF18159_low_10
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 109 - 324
Target Start/End: Complemental strand, 1568318 - 1568103
Alignment:
| Q |
109 |
cttcatgattgaaaaattgatttctcacaaacccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaatcatga |
208 |
Q |
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| T |
1568318 |
cttcatgattgaaaaattgatttctcacaaacccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaatcatga |
1568219 |
T |
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| Q |
209 |
ataacatcaaataaacattacatgtttatgcaacaaaaataatgcacaaatcaatgaaacaaaagcaacaacttcatggtcaaataaaatagcataaacc |
308 |
Q |
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| T |
1568218 |
ataacatcaaataaacattacatgtttatgcaacaaaaataatgcacaaatcaatgaaacaaaagcaacaccttcatgatcaaataaaacagcataaacc |
1568119 |
T |
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| Q |
309 |
catgtgaagaaattgc |
324 |
Q |
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| T |
1568118 |
catgtgaagaaattgc |
1568103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 1568418 - 1568361
Alignment:
| Q |
139 |
acccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttca |
196 |
Q |
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| T |
1568418 |
acccatatgaagaaattgcatgcaaacaattataaaatcatcaaaatcaaaactttca |
1568361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 109 - 202
Target Start/End: Original strand, 18746183 - 18746276
Alignment:
| Q |
109 |
cttcatgattgaaaaattgatttctcacaaacccatacgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaa |
202 |
Q |
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| T |
18746183 |
cttcatgatcgaaaaattgttttctcacaaacccatatgaagaaatcacatgctatcaattgtataatcatcaaaatcaaaactttcaccaaaa |
18746276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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