View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_11 (Length: 411)
Name: NF18159_low_11
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 401
Target Start/End: Complemental strand, 32647608 - 32647222
Alignment:
| Q |
15 |
agtatattgtgaaaattgttttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttga |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
32647608 |
agtatattgtgaaaattgttttctctcaggttcataagattccagagacatttaagtcagcaacagattacaacaactcttttattcctctgttgtttga |
32647509 |
T |
|
| Q |
115 |
ggaaacacgcgctgatttatcttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcac |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647508 |
ggaaacacgcgctgatttatcttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcac |
32647409 |
T |
|
| Q |
215 |
aaagctcaaaatcaattcattcagttccatcataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32647408 |
aaagctcaaaatcaattcattcagttccatcataccatacggttggagagtacaactgaatctgatagagatgaaaatggtggaagttatgaacctgcat |
32647309 |
T |
|
| Q |
315 |
caggagatcttattgctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
401 |
Q |
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| T |
32647308 |
caggagatcttattgctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
32647222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 32566798 - 32567053
Alignment:
| Q |
15 |
agtatattgtgaaaattgttttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttga |
114 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32566798 |
agtatattgtgaaaattgttttctctcaggttcataagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctattgtttga |
32566897 |
T |
|
| Q |
115 |
ggaaacacgcgctgatttatcttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcac |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||| ||| |||||| |||||||||| |||||| ||| | |
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| T |
32566898 |
ggaaacacgcgctgatttatcttcaagcttgtctggtgtgtctcaagctgctctttgtgaaatcaagaatgtcgaacacagcaagcagttgaaacttcgc |
32566997 |
T |
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| Q |
215 |
aaagctcaaaatcaattcattcagttccatcataccatacggttggagagtacaac |
270 |
Q |
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| T |
32566998 |
aaagctcaaaatcaattcattcagttccatcataccatatggttgaagagtacaac |
32567053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 35 - 393
Target Start/End: Complemental strand, 32527063 - 32526711
Alignment:
| Q |
35 |
ttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttat |
134 |
Q |
| |
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|||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||| |
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| T |
32527063 |
ttctcttaggttcataagataccagagacatttaagtcagcaacagattacaagaactctttcattcctctgttgtgtgaggaaacgcgcactgatttat |
32526964 |
T |
|
| Q |
135 |
cttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaatttcacaaagctcaaaatcaattcat |
234 |
Q |
| |
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|||||||||||||||| ||||| | |||| | ||||||||||| |||||| ||| |||||||||||| || ||| |||||||||||| || |||| |
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| T |
32526963 |
cttcaagcttgtctggtgtgtctcgagctcccatttgtgaaatcaagaaagttataaaaagcaagcaattgcaacttcccaaagctcaaaagcatttcaa |
32526864 |
T |
|
| Q |
235 |
tcagttccatcataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttattgctatt |
334 |
Q |
| |
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||||||| ||||| |||| |||| ||||||| || | | || | ||| |||||||| ||||||||||| | |||||||| |||||| | |
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| T |
32526863 |
acagttccgtcataagatacagttgaagagtac------attttacagtgtggaagatggtggagattatgaacctggaagtggagatctcattgctttc |
32526770 |
T |
|
| Q |
335 |
acatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatat |
393 |
Q |
| |
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||| |||||| || ||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
32526769 |
acaaacattagacccaaaagcttagatgacttgaacacactcaaaagtccctaccatat |
32526711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 35 - 401
Target Start/End: Complemental strand, 32533559 - 32533187
Alignment:
| Q |
35 |
ttctctcaggttcatgagattccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttat |
134 |
Q |
| |
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||||||||||||||| ||||||||||||| |||||||| || ||||| ||||||||||||||| | ||||| |||||||||||||||| | ||||||||| |
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| T |
32533559 |
ttctctcaggttcataagattccagagacgtttaagtctgccacagaatacaagaactcttttgtacctctattgtttgaggaaacacacactgatttat |
32533460 |
T |
|
| Q |
135 |
cttcaagcttgtctggcgtgtcacaagcttctctttgtgaaatctggaaagtcgaaaacagcaagcaattgaaa------tttcacaaagctcaaaatca |
228 |
Q |
| |
|
|||||||||||| || || || |||||| || ||||||| ||| || ||| |||| | |||| |||| ||| |||| ||||||||| |
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| T |
32533459 |
cttcaagcttgtttgctgtctctcaagctcctttttgtgagatcaataatgtccaaaaaactgcacaatggaaactttccattccaaaagatcaaaatca |
32533360 |
T |
|
| Q |
229 |
attcattcagttccatcataccatacggttggagagtacaacagaatctgatagagatgaaaatggtggaagttatgaacctgcatcaggagatcttatt |
328 |
Q |
| |
|
|||||| |||||||||||| ||||||| | |||||||||| ||||||||| || |||| | | ||||| |||| |||||| ||||| ||||| ||| |
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| T |
32533359 |
attcatacagttccatcatgacatacggctaaagagtacaactgaatctgatgaagttgaagacgttggaaattataaacctgtgtcaggggatctcatt |
32533260 |
T |
|
| Q |
329 |
gctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctatg |
401 |
Q |
| |
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||| | ||| |||||| ||| ||||||||||||||||||||||||||| | || ||||||| ||| ||||||| |
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| T |
32533259 |
gctttcacacacattaggcctaaaagcttaaatgacttgaacacactccaaagcccctaccgtatcgcctatg |
32533187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 301 - 400
Target Start/End: Original strand, 32567057 - 32567156
Alignment:
| Q |
301 |
ttatgaacctgcatcaggagatcttattgctattacatacattaagccaaaaagcttaaatgacttgaacacactcaacagtccctaccatattgcctat |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32567057 |
ttatgaacctgcgtcaggagatcttattgctattacatacatcaggccaaaaagcttaaatgacttgaacacacttaacagtccctaccatattgcctat |
32567156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 53 - 191
Target Start/End: Complemental strand, 32616089 - 32615951
Alignment:
| Q |
53 |
attccagagacatttaagtcagcaacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttatcttcaagcttgtctggcg |
152 |
Q |
| |
|
||||| ||||| ||||| ||| ||||||||||||||||||| || ||||||| ||| | |||||||||| | |||| |||| ||||| ||||| || | |
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| T |
32616089 |
attcctgagacctttaattcaccaacagattacaagaactccttcattcctccattgctggaggaaacacactctgacttatattcaaacttgttaggag |
32615990 |
T |
|
| Q |
153 |
tgtcacaagcttctctttgtgaaatctggaaagtcgaaa |
191 |
Q |
| |
|
|||| || ||| || |||||||| ||| |||||| |||| |
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| T |
32615989 |
tgtctcatgctcctttttgtgaagtcttgaaagttgaaa |
32615951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 140
Target Start/End: Original strand, 26376799 - 26376864
Alignment:
| Q |
75 |
caacagattacaagaactcttttattcctctgttgtttgaggaaacacgcgctgatttatcttcaa |
140 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| || |||||| ||||| | |||| |||| ||||| |
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| T |
26376799 |
caacagattacaagaactcctttatgcctctgctgcttgagggaacacactctgacttatattcaa |
26376864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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