View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18159_low_13 (Length: 387)
Name: NF18159_low_13
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 5390913 - 5391274
Alignment:
| Q |
12 |
tcatcaaatccgataacctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5390913 |
tcatcaaatccgataacctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaa |
5391012 |
T |
|
| Q |
112 |
aacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391013 |
aacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgtt |
5391112 |
T |
|
| Q |
212 |
gaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttca |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391113 |
gaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttca |
5391212 |
T |
|
| Q |
312 |
tcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattcct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5391213 |
tcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattcct |
5391274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 5399632 - 5399993
Alignment:
| Q |
12 |
tcatcaaatccgataacctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399632 |
tcatcaaatccgataacctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaa |
5399731 |
T |
|
| Q |
112 |
aacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgtt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399732 |
aacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgtt |
5399831 |
T |
|
| Q |
212 |
gaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttca |
311 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5399832 |
gaataacattcccatgcaccttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttca |
5399931 |
T |
|
| Q |
312 |
tcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattcct |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5399932 |
tcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcgttcct |
5399993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 373
Target Start/End: Original strand, 5394451 - 5394812
Alignment:
| Q |
12 |
tcatcaaatccgataacctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5394451 |
tcatcaaatccgataacctcaactccgacccctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacttgaa |
5394550 |
T |
|
| Q |
112 |
aacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgtt |
211 |
Q |
| |
|
|||||| ||||| ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
5394551 |
aacatcaccattactgcaattgaatgcttcattctttgcgttaggatccgctgcaccccaaatatgttgttcggctattaaattagcatctgaagcagta |
5394650 |
T |
|
| Q |
212 |
gaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttca |
311 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
5394651 |
gaataacactcccatgcaccttttgagccaggaaaccttaaaggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttca |
5394750 |
T |
|
| Q |
312 |
tcatgctgtaaggtgaaaatccaaagataacttgtggtcgattaatgaaccatgtcattcct |
373 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
5394751 |
tcatgctataaggtgaaaatccaaagatggggtgtggtcgattaatgaaccatgtcgttcct |
5394812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 86 - 339
Target Start/End: Original strand, 3818850 - 3819103
Alignment:
| Q |
86 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcgg |
185 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| |||||||||||||||| | |
|
|
| T |
3818850 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgttcag |
3818949 |
T |
|
| Q |
186 |
atattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgta |
285 |
Q |
| |
|
|| |||| ||||| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||| |
|
|
| T |
3818950 |
caatcaaatctgcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgta |
3819049 |
T |
|
| Q |
286 |
aacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
339 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3819050 |
aacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
3819103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 86 - 339
Target Start/End: Complemental strand, 47339027 - 47338774
Alignment:
| Q |
86 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttgttcgg |
185 |
Q |
| |
|
||||||||||| || |||||||| |||||||| ||||| || || ||||||||||||||||| |||| ||||||||||||| ||||||||||||| || | |
|
|
| T |
47339027 |
accttccacaattgcttccacctaaaaacatcaccattactacaattgaatgcttcattcttagcataaggatccactgcagcccaaatatgttgctcag |
47338928 |
T |
|
| Q |
186 |
atattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagccaggaaaccttaatggaagaccctcatgcttgcaaattgcagcgta |
285 |
Q |
| |
|
|| |||| |||||| ||||| | | ||| ||||| || || | || ||||| || || |||| |||||||||||| |||||||||||||| |
|
|
| T |
47338927 |
caatcaaatcagcatcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgta |
47338828 |
T |
|
| Q |
286 |
aacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
339 |
Q |
| |
|
|||||||| || ||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
47338827 |
aacacaaatagttccaatgatattcatcatactgtaaggtgaaaatccaaagat |
47338774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 42 - 350
Target Start/End: Complemental strand, 47347541 - 47347233
Alignment:
| Q |
42 |
cctcctcaaatccataatcatcgatctcaaaccgttctgctaacaccttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttc |
141 |
Q |
| |
|
|||| ||||| ||||| || || ||| ||||| |||| || || |||||||| | |||||||| || |||||||| |||||||| ||||| || ||||| |
|
|
| T |
47347541 |
cctcgtcaaacccatactcctcaatcccaaactgttccgccaaaaccttccatagttgtttccatctaaaaacatcaccattgctacagttaaaagcttc |
47347442 |
T |
|
| Q |
142 |
attctttgcattaggatccactgcaccccaaatatgttgttcggatattaaattagcatctgaagctgttgaataacattcccatgcagcttttgagcca |
241 |
Q |
| |
|
||||| |||| |||||||||||| ||||||||||||| || | || |||| ||||| ||||| |||||| | ||||| || | |||| || |
|
|
| T |
47347441 |
gttcttagcataaggatccactgcggcccaaatatgttgctctgcaatcaaatccgcatcagaagccacagaataagactcccaagctccctttgtaccg |
47347342 |
T |
|
| Q |
242 |
ggaaaccttaatggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagataa |
341 |
Q |
| |
|
||||| | || |||| ||| || ||||||||||||||||| ||||||||||| || |||| ||| ||||||| || ||||||||||||||||| |||| |
|
|
| T |
47347341 |
ggaaatttcaacggaacaccttcgtgcttgcaaattgcagcataaacacaaagtgtaccaacgagattcatcaaactataaggtgaaaatccaaatataa |
47347242 |
T |
|
| Q |
342 |
cttgtggtc |
350 |
Q |
| |
|
|||| |||| |
|
|
| T |
47347241 |
cttgaggtc |
47347233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 47350036 - 47349942
Alignment:
| Q |
86 |
accttccacaaatgtttccacctgaaaacatcgccattgctgcagttgaatgcttcattctttgcattaggatccactgcaccccaaatatgttg |
180 |
Q |
| |
|
||||||||||| ||||||||||| |||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||| ||||||| ||||| |
|
|
| T |
47350036 |
accttccacaattgtttccacctaaaaacatcaccattgctacaattgaacgcttcattcttagcataagtatccactgcagcccaaatgtgttg |
47349942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 339
Target Start/End: Complemental strand, 47349859 - 47349783
Alignment:
| Q |
263 |
tcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
339 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||| |
|
|
| T |
47349859 |
tcatgcttgcaaattgcagcgtaaaggcaaagcgtgccaacaacattcatcaaactgtaaggtgagaatccaaagat |
47349783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University