View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_14 (Length: 387)
Name: NF18159_low_14
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_14 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Original strand, 22912484 - 22912856
Alignment:
| Q |
15 |
caaaggcggtgacaaatgaacgaatcagtttcgcaatcgcagctagatagagagatgccttgccttatgcacttttattaatcgcaaactcataaaagct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22912484 |
caaaggcggtgacaaatgaacgaatcagtttcgcaatcgcagctagatagagagatgccttgccttatgcacttttattaatcgcaaactcataaaagct |
22912583 |
T |
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| Q |
115 |
tagtcctaaaagcgcttctctgaataatcaatttcgctttcgctttcgcttttgcttttccgcttagggctctccaactcgctcttttcactcagatttc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22912584 |
tagtcctaaaagcgcttctctgaataatcaatttctctttcgctttcgcttttgcttttccgcttagggctctccaactcgctcctttcactcagatttc |
22912683 |
T |
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| Q |
215 |
tctctcacttctcaggtgcgtgcgtactctcttcgagttgactcatactcttctctacttcgatctactatcaaccttaatctcactgcttttacgcttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22912684 |
tctctcacttctcaggtgcgtgcgtactctcttcgagttgactcatactcttctctacttcgatctactatcaaccttaatctcactgcttttacgcttc |
22912783 |
T |
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| Q |
315 |
aattttcagtatatgcttttcattttataatttgattccgcggaatgaaactgaaatgaaatctaacgtgttt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22912784 |
aattttcagtatatgcttttcattttataatttgattccgcggaatgaaactgaaatgaaatctaacgtgttt |
22912856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 22966038 - 22965666
Alignment:
| Q |
15 |
caaaggcggtgacaaatgaacgaatcagtttcgcaatcgcagctagatagagagatgccttgccttatgcacttttattaatcgcaaactcataaaagct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22966038 |
caaaggcggtgacaaatgaacgaatcagtttcgcaatcgcagctagatagagagatgccttgccttatgcacttttattaatcgcaaactcataaaagct |
22965939 |
T |
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| Q |
115 |
tagtcctaaaagcgcttctctgaataatcaatttcgctttcgctttcgcttttgcttttccgcttagggctctccaactcgctcttttcactcagatttc |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22965938 |
tagtcctaaaagcgcttctctgaataatcaatttctctttcgctttcgcttttgcttttccgcttagggctctccaactcgctcctttcactcagatttc |
22965839 |
T |
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| Q |
215 |
tctctcacttctcaggtgcgtgcgtactctcttcgagttgactcatactcttctctacttcgatctactatcaaccttaatctcactgcttttacgcttc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22965838 |
tctctcacttctcaggtgcgtgcgtactctcttcgagttgactcatactcttctctacttcgatctactatcaaccttaatctcactgcttttacgcttc |
22965739 |
T |
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| Q |
315 |
aattttcagtatatgcttttcattttataatttgattccgcggaatgaaactgaaatgaaatctaacgtgttt |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22965738 |
aattttcagtatatgcttttcattttataatttgattccgcggaatgaaactgaaatgaaatctaacgtgttt |
22965666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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