View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_15 (Length: 376)

Name: NF18159_low_15
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_15
NF18159_low_15
[»] chr1 (7 HSPs)
chr1 (16-365)||(6871189-6871538)
chr1 (245-358)||(36472598-36472710)
chr1 (252-357)||(10799199-10799304)
chr1 (271-355)||(44751954-44752038)
chr1 (245-343)||(32423517-32423613)
chr1 (246-358)||(18635665-18635776)
chr1 (246-309)||(31283772-31283835)
[»] chr8 (7 HSPs)
chr8 (245-358)||(14239217-14239331)
chr8 (247-364)||(18069272-18069389)
chr8 (254-358)||(36665240-36665344)
chr8 (252-343)||(26055464-26055555)
chr8 (271-343)||(12020073-12020145)
chr8 (245-287)||(13380482-13380524)
chr8 (245-286)||(14988507-14988548)
[»] chr7 (2 HSPs)
chr7 (251-358)||(33084908-33085015)
chr7 (245-325)||(37829954-37830034)
[»] chr5 (4 HSPs)
chr5 (246-358)||(6296852-6296963)
chr5 (250-358)||(29814916-29815023)
chr5 (252-358)||(10635301-10635407)
chr5 (245-312)||(39735397-39735465)
[»] chr4 (6 HSPs)
chr4 (293-357)||(8456805-8456869)
chr4 (255-357)||(30979823-30979925)
chr4 (252-354)||(38020376-38020478)
chr4 (261-358)||(2097083-2097180)
chr4 (251-358)||(38450698-38450804)
chr4 (246-302)||(27112403-27112459)
[»] chr2 (4 HSPs)
chr2 (246-357)||(1652535-1652645)
chr2 (271-358)||(26009789-26009876)
chr2 (245-346)||(41508139-41508240)
chr2 (292-358)||(32103577-32103643)
[»] chr3 (6 HSPs)
chr3 (245-355)||(10428020-10428130)
chr3 (252-358)||(42529434-42529540)
chr3 (246-291)||(48308090-48308135)
chr3 (245-307)||(23481386-23481449)
chr3 (254-346)||(51569821-51569914)
chr3 (251-284)||(54913673-54913706)
[»] scaffold0570 (1 HSPs)
scaffold0570 (246-307)||(9084-9146)
[»] chr6 (1 HSPs)
chr6 (246-302)||(2477263-2477319)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 365
Target Start/End: Complemental strand, 6871538 - 6871189
Alignment:
Q  16 cacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaattg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6871538 cacagacctgtgtaaaaagggaaaactaacatcagccactataaaatttacgaagttttttcattattcacaaaaccaaaattaaatgaattttcaattg 6871439  T
Q  116 taatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactgctgcacatttaatta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6871438 taatacatatatctttaaaataaaattctgagtttctcaaaatcaaagcctaacaattaattatggggtgatgtggttttcactactgcacatttaatta 6871339  T
Q  216 acggcatgccaaatttattttannnnnnngaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatat 315  Q
    ||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  6871338 acggcatgccaaatttattttatttttttaaatgacaaatgttagtagttagttattagattagtatatacttattcgttcaggtttgaacccaggacat 6871239  T
Q  316 ccaagtccttatcccttaactcaaaccaattaagctacccaacgtcccaa 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6871238 ccaagtccttatcccttaactcaaaccaattaagctacccaacgtcccaa 6871189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 36472598 - 36472710
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaa 344  Q
    |||||||| ||||||||| |||||| |||||||||| ||| ||  || |||| |||||||||||||||  ||||| ||||||||||||| |||| ||||     
T  36472598 gaatgacagatgttagta-ttagttgttagattagtttttcctcctttgtccgggtttgaacccaggacctccaactccttatcccttagctcagaccag 36472696  T
Q  345 ttaagctacccaac 358  Q
    || |||||||||||    
T  36472697 ttgagctacccaac 36472710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 357
Target Start/End: Complemental strand, 10799304 - 10799199
Alignment:
Q  252 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagct 351  Q
    ||||||||||| |||||| |||||||| ||||||||  ||| ||| |||||||||||||||  | ||| | ||||||||||| ||||||| | || ||||    
T  10799304 aaatgttagtaattagttgttagattaatatttactccttcatcctggtttgaacccaggaacttcaactacttatcccttagctcaaactagttgagct 10799205  T
Q  352 acccaa 357  Q
    ||||||    
T  10799204 acccaa 10799199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 44751954 - 44752038
Alignment:
Q  271 ttagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctaccc 355  Q
    |||||||| |||||||| ||| |||| ||||||||||||| |  |||||  |||||||||||| ||||||||| || ||||||||    
T  44751954 ttagattaatatttactcatttgtccgggtttgaacccagaacctccaaccccttatcccttagctcaaaccagttgagctaccc 44752038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 32423517 - 32423613
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaacca 343  Q
    ||||||||||||||| |||||||  ||||||||| ||||||||  || |||| |||||||||||| ||  ||||| | |||||||||||  ||||||||    
T  32423517 gaatgacaaatgttaatagttag--attagattaatatttactcctttgtccgggtttgaacccaagaactccaacttcttatcccttagttcaaacca 32423613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 358
Target Start/End: Original strand, 18635665 - 18635776
Alignment:
Q  246 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaat 345  Q
    |||| |||||||||||| |||||| |||||| ||| ||| || ||| |||| | |||||||||||||  || || ||||||||||||| |||| |||| |    
T  18635665 aatggcaaatgttagtaattagttgttagatcagttttt-ctcatttgtccggatttgaacccaggacctcaaactccttatcccttagctcagaccagt 18635763  T
Q  346 taagctacccaac 358  Q
    | | |||||||||    
T  18635764 tgaactacccaac 18635776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 31283835 - 31283772
Alignment:
Q  246 aatgacaaatgttagtagttag-ttattagattagtatttacttattcgtccaggtttgaaccca 309  Q
    |||||||||| ||||||||||| || |||||||| |||||||| | |||| ||||||||||||||    
T  31283835 aatgacaaatattagtagttagtttgttagattaatatttactcaatcgt-caggtttgaaccca 31283772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 245 - 358
Target Start/End: Original strand, 14239217 - 14239331
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtattt-acttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaacca 343  Q
    |||||||||||| ||| ||||||||||||||||| ||||| ||| |||||||||||||| |||||||||  ||||| |||||||||| || |||| ||||    
T  14239217 gaatgacaaatggtagaagttagttattagattaatattttactcattcgtccaggtttaaacccaggacctccaactccttatcccctagctcagacca 14239316  T
Q  344 attaagctacccaac 358  Q
     || |||||||||||    
T  14239317 gttgagctacccaac 14239331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 247 - 364
Target Start/End: Complemental strand, 18069389 - 18069272
Alignment:
Q  247 atgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaatt 346  Q
    |||||||||||||||| |||||| || || || ||||||||  || ||||  ||||||||| | ||  | ||| |||||||||||||||||||| |||||    
T  18069389 atgacaaatgttagtaattagttgttggaataatatttactactttgtccgagtttgaacctatgaccttcaactccttatcccttaactcaaatcaatt 18069290  T
Q  347 aagctacccaacgtccca 364  Q
     ||||||||||| |||||    
T  18069289 gagctacccaacttccca 18069272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 358
Target Start/End: Original strand, 36665240 - 36665344
Alignment:
Q  254 atgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctac 353  Q
    |||||||||||||||| |||||||| |||||| |  || |||| ||||||||||||| ||  |||  | |||| |||||| ||||||||| |||||||||    
T  36665240 atgttagtagttagttgttagattaatatttattcctttgtccgggtttgaacccagtatccccatctacttaacccttagctcaaaccagttaagctac 36665339  T
Q  354 ccaac 358  Q
    |||||    
T  36665340 ccaac 36665344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 343
Target Start/End: Complemental strand, 26055555 - 26055464
Alignment:
Q  252 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaacca 343  Q
    ||||||||||| ||||||||||||||| ||||||||  ||| | || ||||||||||| ||  ||||| ||||||||||||| | |||||||    
T  26055555 aaatgttagtaattagttattagattaatatttactctttcattcaagtttgaacccatgacctccaactccttatcccttatcacaaacca 26055464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 343
Target Start/End: Complemental strand, 12020145 - 12020073
Alignment:
Q  271 ttagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaacca 343  Q
    |||||||| |||||||| |||| |   |||||||||||||||  ||||| |||||||||||||||||||||||    
T  12020145 ttagattaatatttactcattcatttgggtttgaacccaggacctccaactccttatcccttaactcaaacca 12020073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 287
Target Start/End: Complemental strand, 13380524 - 13380482
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttact 287  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  13380524 gaatgacaaatgctagtagttagttgttagattaatatttact 13380482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 14988548 - 14988507
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttac 286  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  14988548 gaatgtcaaatgttagtagttggttattagattaatatttac 14988507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 251 - 358
Target Start/End: Original strand, 33084908 - 33085015
Alignment:
Q  251 caaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagc 350  Q
    |||||||||||| |||||| |||||||||| ||| ||  ||||||||||||| |||||||||  ||||| ||| ||||||||| ||||||||| || |||    
T  33084908 caaatgttagtaattagttgttagattagttttttctccttcgtccaggttttaacccaggacctccaactccatatcccttagctcaaaccagttgagc 33085007  T
Q  351 tacccaac 358  Q
    ||||||||    
T  33085008 tacccaac 33085015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 245 - 325
Target Start/End: Complemental strand, 37830034 - 37829954
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtcctt 325  Q
    |||||||||||||||||| |||||| |||||||| ||| ||||  ||||||| |||||||| ||||||  ||||| |||||    
T  37830034 gaatgacaaatgttagtaattagttgttagattaatatctactccttcgtccgggtttgaagccaggacttccaactcctt 37829954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 358
Target Start/End: Complemental strand, 6296963 - 6296852
Alignment:
Q  246 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaat 345  Q
    |||| |||||||||||| |||||| |||||||||| ||| ||  || |||  ||||||||||||| |  ||||| ||||||||||||| |||||||||||    
T  6296963 aatggcaaatgttagtaattagttgttagattagttttt-ctcctttgtctgggtttgaacccagaacctccaactccttatcccttagctcaaaccaat 6296865  T
Q  346 taagctacccaac 358  Q
    | |||||||||||    
T  6296864 tgagctacccaac 6296852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 358
Target Start/End: Original strand, 29814916 - 29815023
Alignment:
Q  250 acaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaag 349  Q
    ||||||||||||| ||| || ||| |||||| ||| ||  || || |||||||||||| ||||  ||||| ||||||||||||| |||||||||||| ||    
T  29814916 acaaatgttagtaattatttgttacattagttttt-ctcctttgttcaggtttgaacctaggacctccaactccttatcccttagctcaaaccaattgag 29815014  T
Q  350 ctacccaac 358  Q
    |||||||||    
T  29815015 ctacccaac 29815023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 358
Target Start/End: Original strand, 10635301 - 10635407
Alignment:
Q  252 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagct 351  Q
    ||||||||||| |||||| |||||| | | ||| ||  |||| || |||||||| ||||||  ||||| ||||||||||||| ||||||||| || ||||    
T  10635301 aaatgttagtaattagttcttagatcatttttttctccttcgcccgggtttgaagccaggacctccaactccttatcccttagctcaaaccagttgagct 10635400  T
Q  352 acccaac 358  Q
    |||||||    
T  10635401 acccaac 10635407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 312
Target Start/End: Original strand, 39735397 - 39735465
Alignment:
Q  245 gaatgacaaatgttagtagttag-ttattagattagtatttacttattcgtccaggtttgaacccagga 312  Q
    ||||||||||||||||||||||| || ||| |||| |||||||| ||| || | |||||||| ||||||    
T  39735397 gaatgacaaatgttagtagttagtttgttatattaatatttactcatttgttcgggtttgaatccagga 39735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 8456869 - 8456805
Alignment:
Q  293 gtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctacccaa 357  Q
    |||| ||||||||||||||| |||||| ||||||||||||| ||||||||| || ||||||||||    
T  8456869 gtccgggtttgaacccaggacatccaactccttatcccttagctcaaaccagttgagctacccaa 8456805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 357
Target Start/End: Complemental strand, 30979925 - 30979823
Alignment:
Q  255 tgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctacc 354  Q
    |||||||  |||||| |||||||||| ||| ||  ||||||| ||||||| |||| ||  ||||| ||||||||||||| ||||||||| || |||||||    
T  30979925 tgttagtgattagttgttagattagttttttctccttcgtccgggtttgagcccaagacctccaactccttatcccttagctcaaaccagttgagctacc 30979826  T
Q  355 caa 357  Q
    |||    
T  30979825 caa 30979823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 38020478 - 38020376
Alignment:
Q  252 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagct 351  Q
    ||||||||||| | |||| |||||||| ||||||||  ||||||| ||||||||||  |||  ||||| |||||| |||||| ||||||||| || ||||    
T  38020478 aaatgttagtaatcagttgttagattaatatttactccttcgtccgggtttgaaccttggacctccaactccttaacccttagctcaaaccagttgagct 38020379  T
Q  352 acc 354  Q
    |||    
T  38020378 acc 38020376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 358
Target Start/End: Complemental strand, 2097180 - 2097083
Alignment:
Q  261 tagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctacccaac 358  Q
    ||||||||| |||||||| ||||||||   | |||| |||||||||||||||  ||||| |||||| |||||| ||||||| | || |||||||||||    
T  2097180 tagttagttgttagattaatatttactcccttgtccgggtttgaacccaggacctccaactccttaacccttagctcaaactagttgagctacccaac 2097083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 358
Target Start/End: Complemental strand, 38450804 - 38450698
Alignment:
Q  251 caaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagc 350  Q
    ||||| |||||| ||| || |||||| | ||||||||||||||||| | |||||||||||    ||||| | |||| |||||| ||||||||| || |||    
T  38450804 caaattttagtaattaattgttagataa-tatttacttattcgtccggatttgaacccagagcctccaacttcttaacccttagctcaaaccagttgagc 38450706  T
Q  351 tacccaac 358  Q
    ||||||||    
T  38450705 tacccaac 38450698  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 27112403 - 27112459
Alignment:
Q  246 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggttt 302  Q
    ||||||||||||||||| ||| || |||||||| ||||||||| ||| ||| |||||    
T  27112403 aatgacaaatgttagtaattaattgttagattaatatttactttttcatcctggttt 27112459  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 1652645 - 1652535
Alignment:
Q  246 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaat 345  Q
    |||| |||||||| ||| |||||| |||||||||| ||| ||  ||| ||| |||||||||| ||||  ||||| | ||||||||||| ||||||||| |    
T  1652645 aatggcaaatgttggtaattagttgttagattagttttt-ctccttcatccgggtttgaacctaggacctccaatttcttatcccttagctcaaaccagt 1652547  T
Q  346 taagctacccaa 357  Q
    | ||||||||||    
T  1652546 tgagctacccaa 1652535  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 26009876 - 26009789
Alignment:
Q  271 ttagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctacccaac 358  Q
    |||||||||| ||| ||  ||||||| |||||||||||||||  ||||| || |||||||||  ||||||||| || |||||||||||    
T  26009876 ttagattagttttttctccttcgtccgggtttgaacccaggacctccaactctttatcccttggctcaaaccagttgagctacccaac 26009789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 346
Target Start/End: Original strand, 41508139 - 41508240
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaa 344  Q
    |||||||||||||||| | |||||| ||| |||| ||||||||  ||||||| ||||||||| ||| |  || || | ||||||||||| |||||| |||    
T  41508139 gaatgacaaatgttagcaattagttgttatattaatatttactccttcgtccgggtttgaactcagaacctctaacttcttatcccttagctcaaatcaa 41508238  T
Q  345 tt 346  Q
    ||    
T  41508239 tt 41508240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 358
Target Start/End: Complemental strand, 32103643 - 32103577
Alignment:
Q  292 cgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagctacccaac 358  Q
    |||||||||||||||||| ||  ||||| |||| |||||||| ||||||| | || |||||||||||    
T  32103643 cgtccaggtttgaacccatgacctccaactcctcatcccttagctcaaactagttgagctacccaac 32103577  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 355
Target Start/End: Original strand, 10428020 - 10428130
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaa 344  Q
    |||||||||||||| ||| |||||| ||||||||  ||||||| ||| ||    ||||||||||| | | | ||| ||||||||||| ||||||||| ||    
T  10428020 gaatgacaaatgttcgtaattagttgttagattaacatttactcatttgtatgagtttgaacccatggttttcaactccttatccctaaactcaaactaa 10428119  T
Q  345 ttaagctaccc 355  Q
     ||||||||||    
T  10428120 ctaagctaccc 10428130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 358
Target Start/End: Complemental strand, 42529540 - 42529434
Alignment:
Q  252 aaatgttagtagttagttattagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaattaagct 351  Q
    ||||||||||||| | || |||||||| ||||||||  |||||  | |||||||| || ||  ||||| ||||||||||||| |||||||||  | ||||    
T  42529540 aaatgttagtagtcaattgttagattaatatttactctttcgtttaagtttgaactcatgacctccaactccttatcccttagctcaaaccagctgagct 42529441  T
Q  352 acccaac 358  Q
    |||||||    
T  42529440 acccaac 42529434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 246 - 291
Target Start/End: Original strand, 48308090 - 48308135
Alignment:
Q  246 aatgacaaatgttagtagttagttattagattagtatttacttatt 291  Q
    |||||||||||||||||||||||| |||||||| |||||| |||||    
T  48308090 aatgacaaatgttagtagttagttgttagattaatatttaattatt 48308135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 23481386 - 23481449
Alignment:
Q  245 gaatgacaaatgttagtagttagttattagatt-agtatttacttattcgtccaggtttgaacc 307  Q
    |||||||||||  |||||||||||| ||||||| |||||| |||  ||||||||||||||||||    
T  23481386 gaatgacaaatcctagtagttagttgttagattaagtattgactatttcgtccaggtttgaacc 23481449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 346
Target Start/End: Complemental strand, 51569914 - 51569821
Alignment:
Q  254 atgttagtagttagtta-ttagattagtatttacttattcgtccaggtttgaacccaggatatccaagtccttatcccttaactcaaaccaatt 346  Q
    ||||||||||||||||  |||||||| ||| | ||  |||||||  |||||||||||| |  ||||| ||||| ||||||| ||||||||||||    
T  51569914 atgttagtagttagtttgttagattaatatcttctccttcgtccgagtttgaacccagaacctccaactccttttcccttagctcaaaccaatt 51569821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 284
Target Start/End: Original strand, 54913673 - 54913706
Alignment:
Q  251 caaatgttagtagttagttattagattagtattt 284  Q
    ||||||||||||||||||| ||||||||||||||    
T  54913673 caaatgttagtagttagttgttagattagtattt 54913706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 9146 - 9084
Alignment:
Q  246 aatgacaaatgttagtagttagttattagatt-agtatttacttattcgtccaggtttgaacc 307  Q
    ||||||||||  |||||||||||| ||||||| |||||| |||  ||||||||||||||||||    
T  9146 aatgacaaatcctagtagttagttgttagattaagtattgactatttcgtccaggtttgaacc 9084  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 2477319 - 2477263
Alignment:
Q  246 aatgacaaatgttagtagttagttattagattagtatttacttattcgtccaggttt 302  Q
    ||||||||||||||||| ||| || |||||||| ||||||||| ||| ||| |||||    
T  2477319 aatgacaaatgttagtaattaattgttagattaatatttactttttcatcctggttt 2477263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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