View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_16 (Length: 373)
Name: NF18159_low_16
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 3021620 - 3021840
Alignment:
| Q |
19 |
gtagttataactggggtgacatggagatttttgatactcaattagtttcactttggaacttctctatttgatac---------------tcttcttggat |
103 |
Q |
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| T |
3021620 |
gtagttataactggggtgacatggagatttttgatactcaattagtttcactttggaacttctctatttgaaacgcaagcacactacactctttttggat |
3021719 |
T |
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| Q |
104 |
gtggttgattttgtaaaacttacnnnnnnnnnagttaagtttgaaataatattgaagtcgcacataaacatagtttgttggattgaacatgaaacttgaa |
203 |
Q |
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| T |
3021720 |
gcgattgattttgtaaaacttactttttttttagttcagtttgaaataatattgaagtcgcacataaacatagtttgttggattgaacatgaaacttgaa |
3021819 |
T |
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| Q |
204 |
ccacctaccatataaagagat |
224 |
Q |
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|||||||| |||||||||||| |
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| T |
3021820 |
ccacctactatataaagagat |
3021840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 125
Target Start/End: Original strand, 3038489 - 3038595
Alignment:
| Q |
19 |
gtagttataactggggtgacatggagatttttgatactcaattagtttcactttggaacttctctatttgatactcttcttggatgtggttgattttgta |
118 |
Q |
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| T |
3038489 |
gtagttataactggggtgacatggagatttttgatactcaattagtttcactttggaacttctctatttgatactcttcttggatgtggttgattttgta |
3038588 |
T |
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| Q |
119 |
aaactta |
125 |
Q |
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||||||| |
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| T |
3038589 |
aaactta |
3038595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 272 - 364
Target Start/End: Original strand, 3021888 - 3021980
Alignment:
| Q |
272 |
gttgatctttatatatgtaagtgatgtaatctcttgatttaaactacatttctcatattcaatacaattttcatttcattttataacctatgt |
364 |
Q |
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| T |
3021888 |
gttgatctttatatatgtaagtgatgtaatctcttgatttaaactacatttctcatattcgatacaattttcatttcattttataacctatgt |
3021980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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