View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_17 (Length: 358)
Name: NF18159_low_17
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_17 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 6306959 - 6307290
Alignment:
| Q |
18 |
tgaaccagcaggcaggatttcggaagcaagtatttgaggcttttgtgagcaattgtttggtgcctaaagtgtaaccttcgaatatcactccttccacann |
117 |
Q |
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| T |
6306959 |
tgaaccagcaggcaggatttcggaagcaagtatttgaggcttttgtgagcaattgtttggtgcctaaagagtaaccttcgaatatcactccttccacatt |
6307058 |
T |
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| Q |
118 |
nnnnnctccttttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcataagctcttcaagtaaa |
217 |
Q |
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| T |
6307059 |
tttttctccttttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcataagctcttcaagtaaa |
6307158 |
T |
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| Q |
218 |
gacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggtataatgagtgcgagga |
317 |
Q |
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| T |
6307159 |
gacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggtataatgagtgcgagga |
6307258 |
T |
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| Q |
318 |
agattatgtacctcatatcatatgtttcatct |
349 |
Q |
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| T |
6307259 |
agattatgtacctcatatcatatgtttcatct |
6307290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 147 - 345
Target Start/End: Complemental strand, 13168480 - 13168282
Alignment:
| Q |
147 |
cttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcataagctcttcaagtaaagacctactcataaaccaaattattttgca |
246 |
Q |
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| T |
13168480 |
cttctgtggaaccaaacaaagtgttcatgtgatctccaaaaaatccaatatgcatgagctcttcaagcgaacatctgctcataaacagaattattatgca |
13168381 |
T |
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| Q |
247 |
gtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggtataatgagtgcgaggaagattatgtacctcatatcatatgtttc |
345 |
Q |
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| T |
13168380 |
gtaacataaaattgagcagagcctgtaaactaaacttattccccaagttatcagtataatgactgctaggaagattatgtacctcaaatcacatgtttc |
13168282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 147 - 338
Target Start/End: Complemental strand, 5648768 - 5648577
Alignment:
| Q |
147 |
cttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcataagctcttcaagtaaagacctactcataaaccaaattattttgca |
246 |
Q |
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| T |
5648768 |
cttctgtggaaccaaacaaagtgttcatgtggtctacacgaaatccaatatgcatgagctcttcaagagaatacctgttcataaacagaaatattttgca |
5648669 |
T |
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| Q |
247 |
gtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggtataatgagtgcgaggaagattatgtacctcatatcat |
338 |
Q |
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| T |
5648668 |
gtaacataaaatggaacagagcctctaaactgaatttagtccccaaattatcagtaaagtgagtgataggaaggttatgtacctcaaatcat |
5648577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 349
Target Start/End: Original strand, 5604147 - 5604295
Alignment:
| Q |
203 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
302 |
Q |
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| T |
5604147 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
5604246 |
T |
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| Q |
303 |
taatgagtgcgaggaaga--ttatgtacctcatatcatatgtttcatct |
349 |
Q |
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| T |
5604247 |
taatgagcgataggaagactatatctacctcaaatcatgtgtttcatct |
5604295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 349
Target Start/End: Complemental strand, 5631223 - 5631075
Alignment:
| Q |
203 |
agctcttcaagtaaagacctactcataaaccaaattattttgcagtaccataaaatggaacagagtcaataaactaaatttattccctaagttatcggta |
302 |
Q |
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|||||||||||| || |||| ||||||||| ||||||||||||||| ||| |||||||||||| | |||||||||||||||||| |||||||| ||| |
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| T |
5631223 |
agctcttcaagtgaatacctgctcataaacataattattttgcagtaaaatataatggaacagagcccgtaaactaaatttattccccaagttatcagta |
5631124 |
T |
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| Q |
303 |
taatgagtgcgaggaaga--ttatgtacctcatatcatatgtttcatct |
349 |
Q |
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| T |
5631123 |
taatgagcgataggaagactatatctacctcaaatcatgtgtttcatct |
5631075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 14418190 - 14418118
Alignment:
| Q |
129 |
ttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcat |
201 |
Q |
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| T |
14418190 |
ttcagctgttgcttttttcttctcttaaacaaaacaaagtgatcatgtgctctccaccaaatccaatatgcat |
14418118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 331
Target Start/End: Complemental strand, 5554828 - 5554769
Alignment:
| Q |
272 |
taaactaaatttattccctaagttatcggtataatgagtgcgaggaagattatgtacctc |
331 |
Q |
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| T |
5554828 |
taaattaaatttagtccccaagttatcagtataatgagtgctaggaagattatgtacctc |
5554769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 529 - 601
Alignment:
| Q |
129 |
ttcagctgttgcttttgccttctgtcgaaccaagcaaagtgttcatgtgctctccaccaaatccaatatgcat |
201 |
Q |
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| T |
529 |
ttcagctgttgcttttttcttctcttaaacaaaacaaagtgatcatgtgctctccaccaaatccaatatgcat |
601 |
T |
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