View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_2 (Length: 688)

Name: NF18159_low_2
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_2
NF18159_low_2
[»] chr2 (2 HSPs)
chr2 (537-674)||(7131244-7131381)
chr2 (28-87)||(20488707-20488766)
[»] chr4 (3 HSPs)
chr4 (37-92)||(4608495-4608550)
chr4 (40-94)||(5450692-5450746)
chr4 (28-92)||(10582996-10583060)
[»] chr5 (2 HSPs)
chr5 (28-92)||(10282445-10282509)
chr5 (28-84)||(18477034-18477090)
[»] scaffold0168 (1 HSPs)
scaffold0168 (40-94)||(24164-24218)
[»] chr3 (2 HSPs)
chr3 (28-86)||(21822248-21822306)
chr3 (35-92)||(7857705-7857762)
[»] chr7 (2 HSPs)
chr7 (28-88)||(11226258-11226318)
chr7 (28-94)||(8299544-8299610)
[»] chr1 (2 HSPs)
chr1 (28-64)||(21262482-21262518)
chr1 (29-69)||(12831288-12831328)
[»] scaffold0070 (1 HSPs)
scaffold0070 (29-92)||(3453-3516)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 537 - 674
Target Start/End: Complemental strand, 7131381 - 7131244
Alignment:
Q  537 ttctcaatggttatatatagtcgtgttttctctatatcgatgatttatctttgttgtattgcttttccaatgtaaaactctgagattaacattttgattt 636  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7131381 ttctcaatggttatatatagtcgtgttttctctatatcgatgatttatctttgttgtattgcttttccaatgtaaaactctgaaattaacattttgattt 7131282  T
Q  637 taataagttcttgtacaccgaggataaattcatctgtg 674  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7131281 taataagttcttgtacaccgaggataaattcatctgtg 7131244  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 20488766 - 20488707
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtg 87  Q
    ||||||||| |||||||||||||| ||||||||||||||||| ||| | |||||||||||    
T  20488766 tttttgaggccttttgtttgaggaaaaacaaagttctaagttggggggagttgataagtg 20488707  T

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Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 4608495 - 4608550
Alignment:
Q  37 acttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaa 92  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||    
T  4608495 acttttgtttgaggaaaaacaaagttctaagttggggagggttgataagtgtcaaa 4608550  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 94
Target Start/End: Original strand, 5450692 - 5450746
Alignment:
Q  40 tttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaaat 94  Q
    |||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||    
T  5450692 tttgtttgaggacaaacagagttataagttggggagcgttgataagtgccaaaat 5450746  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 10582996 - 10583060
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaa 92  Q
    ||||||||||||||||||||||| ||  |||| || |||||| ||||| ||||||||||| ||||    
T  10582996 tttttgaggacttttgtttgaggtcacccaaaattttaagttggggagagttgataagtgtcaaa 10583060  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 10282445 - 10282509
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaa 92  Q
    |||||||||| | |||||||||||||||||||| |||||||| || || ||||||||||||||||    
T  10282445 tttttgaggattattgtttgaggacaaacaaagctctaagttgggaagagttgataagtgccaaa 10282509  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 18477090 - 18477034
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataa 84  Q
    ||||| |||||||||||||||| |||||||||| |||||||| ||||| ||||||||    
T  18477090 ttttttaggacttttgtttgagtacaaacaaagctctaagttggggagagttgataa 18477034  T

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Target: scaffold0168 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 24218 - 24164
Alignment:
Q  40 tttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaaat 94  Q
    ||||||||||||||||||||| | |||||| ||||| |||||||||||| |||||    
T  24218 tttgtttgaggacaaacaaagatttaagttggggagagttgataagtgctaaaat 24164  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 86
Target Start/End: Original strand, 21822248 - 21822306
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagt 86  Q
    |||||||||  ||||||||||| ||||||||||||| || |||||||| ||||||||||    
T  21822248 tttttgaggcattttgtttgagtacaaacaaagttcaaaattagggagagttgataagt 21822306  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 7857762 - 7857705
Alignment:
Q  35 ggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaa 92  Q
    |||||||||||| ||||||||||||||||| |||| |   | ||||||||||||||||    
T  7857762 ggacttttgtttaaggacaaacaaagttcttagttggaatgagttgataagtgccaaa 7857705  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 11226258 - 11226318
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgc 88  Q
    ||||| ||||||||||||||| |||||||||||||  ||| | ||||| ||||||||||||    
T  11226258 ttttttaggacttttgtttgacgacaaacaaagttaaaaggtggggagagttgataagtgc 11226318  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 8299610 - 8299544
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaaat 94  Q
    ||||| ||||||||| ||||| || ||||||||||||||||| ||||| ||| |||| ||| |||||    
T  8299610 ttttttaggacttttatttgatgaaaaacaaagttctaagttggggagagtttataaatgctaaaat 8299544  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 21262518 - 21262482
Alignment:
Q  28 tttttgaggacttttgtttgaggacaaacaaagttct 64  Q
    |||||||||| ||||||||||||||||||||||||||    
T  21262518 tttttgaggatttttgtttgaggacaaacaaagttct 21262482  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 12831328 - 12831288
Alignment:
Q  29 ttttgaggacttttgtttgaggacaaacaaagttctaagtt 69  Q
    |||||||||||||| ||| |||||||| |||||||||||||    
T  12831328 ttttgaggacttttattttaggacaaaaaaagttctaagtt 12831288  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 92
Target Start/End: Complemental strand, 3516 - 3453
Alignment:
Q  29 ttttgaggacttttgtttgaggacaaacaaagttctaagttagggagggttgataagtgccaaa 92  Q
    |||| ||||||||||||| | | |||||||||||||||||| | ||  ||||||||||||||||    
T  3516 ttttaaggacttttgtttaaaggcaaacaaagttctaagttggagacagttgataagtgccaaa 3453  T

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