View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_21 (Length: 280)
Name: NF18159_low_21
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 40902909 - 40903161
Alignment:
| Q |
10 |
ataattctgcagaatagggcgatgattttatggcagctgcacatcgctagtgggaaacgttggtgccgtcaaaaatctgtatgtttggttggagattact |
109 |
Q |
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| T |
40902909 |
ataattcggcagaatacggcgatgattttatggcagctgcacatcgctagtgggaaacgttggtgccgtcaaaaatctgtatgtttggttggagattact |
40903008 |
T |
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| Q |
110 |
tcaagataggctaccaatccgggtagaattatggagtagaggggttattcgcgatgtgcataaaaaatgttgtgtgttttgctttttgcaaagggaagaa |
209 |
Q |
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| T |
40903009 |
tcaagataggctaacaacccgggtagaattatggagtagaggggttattcgcgatgtgcatcaacaatgttgtgtgttttgctttttgcaaagggaagaa |
40903108 |
T |
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| Q |
210 |
aggcaagaaagtgtcccacttagtttggctaacaatggcttggtgtatttggt |
262 |
Q |
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| T |
40903109 |
aggcaagaaagtgtcccacttagtttggctaacaatggcttggtgtgtttggt |
40903161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 194
Target Start/End: Original strand, 30149769 - 30149954
Alignment:
| Q |
10 |
ataattctgcagaatagggcgatgat-tttatggcagctgcacatcgctagtgggaaacgttggtgccgtcaaaaatctgtatgtttggttggagattac |
108 |
Q |
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| T |
30149769 |
ataattctgcagaatacggcgatggtatttatggtagctgtgcatcgctagtgggaaacgtcggtgccgtcaaaaatttgtatgtttggatggagattac |
30149868 |
T |
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| Q |
109 |
ttcaagataggctaccaatccgggtagaattatggagtagaggggttattcgcgatgtgcataaaaaatgttgtgtgttttgcttt |
194 |
Q |
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| T |
30149869 |
ttcaagataggctaccaacccgggtagaattatggaggagaggggttattcgcagcgtgcatcaacaatgttgtgtgttttgcttt |
30149954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 30150097 - 30150147
Alignment:
| Q |
194 |
tttgcaaagggaagaaaggcaagaaagtgtcccacttagtttggctaacaa |
244 |
Q |
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| T |
30150097 |
tttgcaaaggggggaatggcaagaaagtgtcccacttagtttggctaacaa |
30150147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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