View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18159_low_23 (Length: 256)
Name: NF18159_low_23
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 46012711 - 46012939
Alignment:
| Q |
18 |
attcaaatatgtggaaattagttctgcacatcttaaatcaattttgactccttcaaaagtggaaccaagcaaattctgtgttgtatatagcttcgaatct |
117 |
Q |
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| T |
46012711 |
attcaaatatgcggaaattagttctacacatcttaaatcaattttgactccttcaaaagtggaaccaagcaaattctgtgttgtatatagcttcgaatct |
46012810 |
T |
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| Q |
118 |
ctataagcgtctaatatagcaacatctggttagatatttgaaaagaacgattcaaaatccaaaagaacttttccagttcacatgaaagtatatcaaccca |
217 |
Q |
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| T |
46012811 |
ctataagcgtctaatatagcaacatctggttagatatttgaaaagaacgattcaaaatccaaaagaacttttccagttcacatgaaagtatatcaaccca |
46012910 |
T |
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| Q |
218 |
aatctctccaaaggcatgtgacagtataa |
246 |
Q |
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| T |
46012911 |
aatctctccaaaggcatgtgacagtataa |
46012939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Original strand, 46019197 - 46019237
Alignment:
| Q |
206 |
tatatcaacccaaatctctccaaaggcatgtgacagtataa |
246 |
Q |
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| T |
46019197 |
tatatcaacccaaatctctccaaaggcatgtgacagtataa |
46019237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 19601749 - 19601717
Alignment:
| Q |
53 |
aatcaattttgactccttcaaaagtggaaccaa |
85 |
Q |
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| T |
19601749 |
aatcaattttgactcctccaaaagtggaaccaa |
19601717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 37649627 - 37649659
Alignment:
| Q |
53 |
aatcaattttgactccttcaaaagtggaaccaa |
85 |
Q |
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| T |
37649627 |
aatcaattttgactcctccaaaagtggaaccaa |
37649659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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