View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_25 (Length: 253)

Name: NF18159_low_25
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_25
NF18159_low_25
[»] chr7 (2 HSPs)
chr7 (8-101)||(22323658-22323749)
chr7 (8-105)||(22728756-22728851)
[»] chr5 (1 HSPs)
chr5 (33-105)||(36434637-36434707)
[»] chr1 (4 HSPs)
chr1 (23-106)||(25184544-25184625)
chr1 (19-105)||(42605980-42606064)
chr1 (12-106)||(52164611-52164704)
chr1 (50-105)||(22964007-22964062)
[»] chr6 (2 HSPs)
chr6 (8-67)||(31554450-31554507)
chr6 (71-106)||(31538599-31538634)
[»] chr3 (1 HSPs)
chr3 (59-105)||(47402567-47402613)
[»] chr2 (1 HSPs)
chr2 (59-105)||(43114263-43114309)
[»] chr4 (1 HSPs)
chr4 (50-106)||(4883599-4883655)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 8 - 101
Target Start/End: Original strand, 22323658 - 22323749
Alignment:
Q  8 aacctgtgaattaaatgcgttagaatgggagggaattattgctaggttagatttagggttagggttagcttgaccatacaagctttagtaagta 101  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22323658 aacctgtgaattaaatgcgttagaatgggagggaa--attgctaggttagatttagggttagggttagcttgaccaaacaagctttagtaagta 22323749  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 22728851 - 22728756
Alignment:
Q  8 aacctgtgaattaaatgcgttagaatgggagggaattattgctaggttagatttagggttagggttagcttgaccatacaagctttagtaagtaagat 105  Q
    |||||||||||||||||||||||||||||| |  |  ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  22728851 aacctgtgaattaaatgcgttagaatgggaagtga--attgctaggttagatttagggttagggttagcttgaccagacaaactttaataagtaagat 22728756  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 36434637 - 36434707
Alignment:
Q  33 tgggagggaattattgctaggttagatttagggttagggttagcttgaccatacaagctttagtaagtaagat 105  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  36434637 tgggagggaa--attgctaggttagatttagggttagggttagcttgaccagacaaactttagtaagtaagat 36434707  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 25184625 - 25184544
Alignment:
Q  23 tgcgttagaatgggagggaattattgctaggttagatttagggttagggttagcttgaccatacaagctttagtaagtaagata 106  Q
    |||||||||||| |||||||  | |||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||    
T  25184625 tgcgttagaatgagagggaa--agtgctaggttaaatttagggttagggttagcttgaccagacaagctttaataagtaagata 25184544  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 42605980 - 42606064
Alignment:
Q  19 taaatgcgttagaatgggagggaattattgctaggttagatttagggttagggttagcttgaccatacaagctttagtaagtaagat 105  Q
    ||||||| |||||||| | |||||  | ||||||||||  ||||||||||||||||||||||||  |||||||||| ||||||||||    
T  42605980 taaatgctttagaatgagcgggaa--aatgctaggttaattttagggttagggttagcttgacctgacaagctttaataagtaagat 42606064  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 52164704 - 52164611
Alignment:
Q  12 tgtgaattaaatgcgttagaatgggagggaattattgctaggtta-gatttagggttagggttagcttgaccatacaagctttagtaagtaagata 106  Q
    |||||||||| |||||| |||||||||||||  |  ||||||||| || || ||||||||| | ||||||||| ||||||||||| ||| ||||||    
T  52164704 tgtgaattaattgcgttggaatgggagggaaaaa--gctaggttatgaattggggttagggattgcttgaccagacaagctttagaaagaaagata 52164611  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 22964062 - 22964007
Alignment:
Q  50 taggttagatttagggttagggttagcttgaccatacaagctttagtaagtaagat 105  Q
    ||||||||| |||||||||    ||||||||||| |||||||||||||||||||||    
T  22964062 taggttagaattagggttaccaatagcttgaccagacaagctttagtaagtaagat 22964007  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 31554507 - 31554450
Alignment:
Q  8 aacctgtgaattaaatgcgttagaatgggagggaattattgctaggttagatttagggtt 67  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  31554507 aacctgtgaattaaatgcgttagaatgggatggaa--attgctaggttagatttagggtt 31554450  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 106
Target Start/End: Complemental strand, 31538634 - 31538599
Alignment:
Q  71 gttagcttgaccatacaagctttagtaagtaagata 106  Q
    ||||||||||||| ||||||||||||||||||||||    
T  31538634 gttagcttgaccagacaagctttagtaagtaagata 31538599  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 47402567 - 47402613
Alignment:
Q  59 tttagggttagggttagcttgaccatacaagctttagtaagtaagat 105  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  47402567 tttagggttagggttagcttgacctgacaagctttagtaagtaagat 47402613  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 43114263 - 43114309
Alignment:
Q  59 tttagggttagggttagcttgaccatacaagctttagtaagtaagat 105  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||    
T  43114263 tttagggttagggttagcttgacctgacaagctttagtaagtaagat 43114309  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 50 - 106
Target Start/End: Original strand, 4883599 - 4883655
Alignment:
Q  50 taggttagatttagggttagggttagcttgaccatacaagctttagtaagtaagata 106  Q
    |||||||| ||||||||||||  ||||||||||  ||||||||||||||||||||||    
T  4883599 taggttagttttagggttaggaatagcttgacctaacaagctttagtaagtaagata 4883655  T

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