View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_26 (Length: 250)

Name: NF18159_low_26
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_26
NF18159_low_26
[»] chr2 (16 HSPs)
chr2 (9-250)||(19320306-19320547)
chr2 (56-193)||(25918654-25918790)
chr2 (66-182)||(24440698-24440811)
chr2 (56-180)||(22383481-22383604)
chr2 (56-193)||(15668508-15668644)
chr2 (9-210)||(14793935-14794128)
chr2 (113-180)||(20568202-20568269)
chr2 (66-180)||(21846168-21846280)
chr2 (103-180)||(24157888-24157965)
chr2 (113-180)||(10896398-10896465)
chr2 (101-201)||(19643631-19643733)
chr2 (113-220)||(22683496-22683603)
chr2 (58-196)||(33705962-33706100)
chr2 (117-180)||(24844204-24844267)
chr2 (66-175)||(21911046-21911153)
chr2 (103-182)||(24302929-24303008)
[»] scaffold0758 (1 HSPs)
scaffold0758 (55-201)||(4283-4428)
[»] chr5 (16 HSPs)
chr5 (55-250)||(27276081-27276277)
chr5 (56-178)||(17262742-17262863)
chr5 (54-192)||(31589008-31589144)
chr5 (56-192)||(39798877-39799011)
chr5 (56-179)||(34638460-34638581)
chr5 (58-192)||(27057329-27057461)
chr5 (79-179)||(34637549-34637649)
chr5 (66-180)||(26119832-26119944)
chr5 (56-182)||(20567814-20567939)
chr5 (103-182)||(23589770-23589849)
chr5 (113-179)||(20237391-20237457)
chr5 (56-194)||(20969209-20969345)
chr5 (103-180)||(13692475-13692552)
chr5 (113-180)||(16607581-16607647)
chr5 (102-177)||(2152916-2152991)
chr5 (103-194)||(22585994-22586085)
[»] chr3 (29 HSPs)
chr3 (56-182)||(22766550-22766675)
chr3 (56-197)||(315099-315238)
chr3 (53-220)||(17762084-17762251)
chr3 (53-220)||(19063404-19063571)
chr3 (55-195)||(21317404-21317542)
chr3 (56-182)||(8729015-8729141)
chr3 (56-182)||(9080902-9081028)
chr3 (66-180)||(17697633-17697746)
chr3 (9-178)||(27851508-27851678)
chr3 (56-201)||(16305162-16305306)
chr3 (66-182)||(16794302-16794416)
chr3 (60-193)||(11078665-11078797)
chr3 (113-194)||(13699427-13699508)
chr3 (55-182)||(19197897-19198023)
chr3 (56-182)||(4243191-4243314)
chr3 (55-220)||(11513850-11514015)
chr3 (55-192)||(13653929-13654063)
chr3 (105-182)||(16882350-16882427)
chr3 (103-192)||(20418291-20418380)
chr3 (103-201)||(3087596-3087695)
chr3 (103-180)||(10851868-10851945)
chr3 (55-175)||(14007584-14007703)
chr3 (113-232)||(13932005-13932124)
chr3 (56-178)||(14072704-14072825)
chr3 (55-157)||(15647761-15647863)
chr3 (103-147)||(14077405-14077449)
chr3 (102-180)||(27374831-27374909)
chr3 (55-98)||(13931957-13932000)
chr3 (113-180)||(12397140-12397207)
[»] chr4 (13 HSPs)
chr4 (53-241)||(17812213-17812402)
chr4 (55-180)||(20570980-20571103)
chr4 (103-250)||(20577339-20577487)
chr4 (86-180)||(13027817-13027910)
chr4 (58-179)||(18394543-18394665)
chr4 (56-192)||(2651808-2651942)
chr4 (103-192)||(14357100-14357189)
chr4 (56-180)||(14902440-14902561)
chr4 (56-180)||(18774057-18774179)
chr4 (113-180)||(10249879-10249946)
chr4 (103-154)||(16324523-16324574)
chr4 (115-156)||(41114770-41114811)
chr4 (66-134)||(19889020-19889086)
[»] chr6 (27 HSPs)
chr6 (53-201)||(26185724-26185870)
chr6 (66-201)||(18026756-18026891)
chr6 (56-178)||(24728568-24728688)
chr6 (53-194)||(31127339-31127478)
chr6 (55-178)||(30451548-30451670)
chr6 (106-190)||(24398722-24398806)
chr6 (113-180)||(25930546-25930613)
chr6 (66-176)||(16462665-16462773)
chr6 (56-182)||(23006065-23006189)
chr6 (56-182)||(23782177-23782301)
chr6 (56-182)||(32335836-32335961)
chr6 (103-190)||(13145193-13145280)
chr6 (103-182)||(18172042-18172121)
chr6 (56-173)||(10704567-10704683)
chr6 (66-178)||(7812037-7812148)
chr6 (56-147)||(15551991-15552083)
chr6 (56-139)||(17867580-17867661)
chr6 (56-139)||(17877363-17877444)
chr6 (103-182)||(19875895-19875974)
chr6 (55-182)||(21035010-21035136)
chr6 (103-182)||(24718751-24718830)
chr6 (108-179)||(25595947-25596018)
chr6 (66-180)||(12348120-12348234)
chr6 (103-147)||(23231243-23231287)
chr6 (113-180)||(23298019-23298086)
chr6 (103-157)||(17445692-17445746)
chr6 (113-157)||(19625881-19625925)
[»] chr1 (13 HSPs)
chr1 (56-201)||(21683115-21683258)
chr1 (56-192)||(18517101-18517235)
chr1 (53-201)||(26703567-26703714)
chr1 (66-180)||(23054392-23054504)
chr1 (103-192)||(18129951-18130039)
chr1 (109-196)||(2819253-2819340)
chr1 (91-193)||(16478658-16478760)
chr1 (56-180)||(16869978-16870101)
chr1 (103-194)||(26279988-26280079)
chr1 (103-180)||(9346814-9346889)
chr1 (103-182)||(1090483-1090563)
chr1 (113-180)||(20909478-20909545)
chr1 (119-173)||(20109897-20109951)
[»] scaffold0388 (1 HSPs)
scaffold0388 (57-197)||(5392-5532)
[»] chr8 (8 HSPs)
chr8 (55-201)||(19505441-19505585)
chr8 (53-200)||(12541633-12541779)
chr8 (53-180)||(18558025-18558151)
chr8 (69-180)||(17916844-17916953)
chr8 (118-203)||(1208623-1208709)
chr8 (66-192)||(12193921-12194045)
chr8 (66-192)||(12438349-12438473)
chr8 (113-157)||(18772685-18772729)
[»] chr7 (20 HSPs)
chr7 (56-204)||(16104993-16105140)
chr7 (54-201)||(18361583-18361729)
chr7 (56-192)||(18047846-18047980)
chr7 (55-180)||(9064198-9064321)
chr7 (56-180)||(5035387-5035509)
chr7 (55-173)||(16472693-16472808)
chr7 (61-175)||(16307756-16307868)
chr7 (108-173)||(13172382-13172447)
chr7 (114-178)||(11572278-11572342)
chr7 (58-174)||(14114050-14114166)
chr7 (58-174)||(14423700-14423816)
chr7 (58-178)||(15871121-15871240)
chr7 (113-180)||(16412061-16412129)
chr7 (66-157)||(7487951-7488040)
chr7 (55-129)||(25807394-25807468)
chr7 (113-175)||(2501095-2501157)
chr7 (55-125)||(16412744-16412814)
chr7 (58-196)||(23125947-23126085)
chr7 (113-178)||(11016034-11016098)
chr7 (110-178)||(1878264-1878331)
[»] scaffold0498 (1 HSPs)
scaffold0498 (58-197)||(3262-3401)
[»] scaffold0311 (1 HSPs)
scaffold0311 (55-182)||(20082-20207)
[»] scaffold0622 (2 HSPs)
scaffold0622 (53-175)||(3381-3501)
scaffold0622 (111-180)||(2728-2797)
[»] scaffold0074 (1 HSPs)
scaffold0074 (56-190)||(31639-31771)
[»] scaffold0092 (1 HSPs)
scaffold0092 (55-198)||(8097-8237)
[»] scaffold0040 (1 HSPs)
scaffold0040 (55-192)||(3983-4118)
[»] scaffold0351 (1 HSPs)
scaffold0351 (56-192)||(9217-9348)
[»] scaffold0002 (1 HSPs)
scaffold0002 (56-192)||(112222-112353)
[»] scaffold1107 (1 HSPs)
scaffold1107 (69-174)||(2339-2444)
[»] scaffold0522 (2 HSPs)
scaffold0522 (55-182)||(4238-4363)
scaffold0522 (55-182)||(11521-11646)
[»] scaffold0683 (1 HSPs)
scaffold0683 (103-204)||(436-537)
[»] scaffold0490 (1 HSPs)
scaffold0490 (103-182)||(7384-7463)
[»] scaffold0011 (1 HSPs)
scaffold0011 (103-182)||(59618-59697)
[»] scaffold0364 (1 HSPs)
scaffold0364 (66-180)||(10379-10491)
[»] scaffold0067 (1 HSPs)
scaffold0067 (79-173)||(16400-16494)
[»] scaffold0772 (1 HSPs)
scaffold0772 (103-180)||(853-930)
[»] scaffold0003 (3 HSPs)
scaffold0003 (113-180)||(773-841)
scaffold0003 (120-175)||(416028-416083)
scaffold0003 (55-125)||(1456-1526)
[»] scaffold0035 (1 HSPs)
scaffold0035 (113-180)||(29867-29933)
[»] scaffold0043 (1 HSPs)
scaffold0043 (56-178)||(1813-1934)
[»] scaffold1026 (1 HSPs)
scaffold1026 (103-156)||(3027-3080)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 19320547 - 19320306
Alignment:
Q  9 agcagagacacaactgtagcagtgctatgcgcatacatgaacataatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19320547 agcagagacacaactgtagcagtgctatgcgcatacatgaacataatagtggagtactggttgtactatcgtactattgtcatttctctgcgcttcttca 19320448  T
Q  109 gtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaact 208  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19320447 gtgtataagcatccaatgccttctaattcctctgaaatagctgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaact 19320348  T
Q  209 gaattcaggttcagactctgaaggcttcagactctggtggct 250  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  19320347 gaattcaggttcagactctgaaggcttcagactctagtggct 19320306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 56 - 193
Target Start/End: Original strand, 25918654 - 25918790
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||||||| ||   ||||||| ||| |||| |||||||||||||||||||||||||||||||  ||| | ||||    
T  25918654 agtggagtagtggttgtacaattgtactattgtccttctactgcgct-ctttagtggataagcatccaatgccttctaattcctctgatgtagacattgc 25918752  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaa 193  Q
    || || |||||||||||||||||| |  ||||||||||    
T  25918753 tccagacttctattccttctgcaaacttgtgtcttcaa 25918790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 24440811 - 24440698
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||| ||| ||| | |||||| |||||||| |||| |||||||||||||||||||||||||||||||| ||||||| || ||||    
T  24440811 tggttgtacaattgtactat-gtccttt-tatgcgct-cttcagtggataaacatccaatgccttctaattcctctgaaatagcagttgctccaggcttc 24440715  T
Q  166 tattccttctgcaatca 182  Q
    |||||||||||||||||    
T  24440714 tattccttctgcaatca 24440698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 22383481 - 22383604
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||   |||||||||| ||| | |||||| ||| |||| ||||||||||||||||||||||||||||| |||||||||||||    
T  22383481 agtggagtagtggttgtacaaatatactattgtcctttttatgcgct-ctttagtggataagcatccaatgccttctaattcctctaaaatagccgttgc 22383579  T
Q  156 tctagccttctattccttctgcaat 180  Q
    ||  | |||| ||||||||| ||||    
T  22383580 tcacggcttccattccttctacaat 22383604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 193
Target Start/End: Complemental strand, 15668644 - 15668508
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| ||| |||||||| ||||||||||| | | ||| || | |||||||| |||||||||||||||||| |||||| |||||||||||||||||    
T  15668644 agtggagtagtgggtgtacaattgtactattgtcctatttcttcggt-cttcagtggataagcatccaatgccttttaattcatctgaaatagccgttgc 15668546  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaa 193  Q
    |  |  ||| ||||||||||||| ||  ||||||||||    
T  15668545 ttcaagcttatattccttctgcagtcttgtgtcttcaa 15668508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 210
Target Start/End: Complemental strand, 14794128 - 14793935
Alignment:
Q  9 agcagagacacaactgtagcagtgctatgcgcatacatgaacataatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttca 108  Q
    ||||||||||||||||||| ||| ||||||||| |        ||||||||||| | |||||||||||  ||| ||||||| ||||| ||  |||||||     
T  14794128 agcagagacacaactgtagtagtactatgcgcaga--------taatagtggagcagtggttgtacaaatgtattattgtcctttctttgttcttcttcg 14794037  T
Q  109 gtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaact 208  Q
    |||  ||||||| ||||| ||| ||||||||||||||||| |||||||| || ||||| |||||||| |||    |||||||||| ||||||| | ||||    
T  14794036 gtgagtaagcatgcaatgtcttataattcctctgaaatagtcgttgctccaggcttctgttccttctacaaatttgtgtcttcaattaaccaatttaact 14793937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 20568202 - 20568269
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||||||||||||||||||||| | ||||||||||||||| || |||||||||||||| ||||    
T  20568202 ataagcatccaatgccttctaattcctataaaatagccgttgctccaggcttctattccttctacaat 20568269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 21846168 - 21846280
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| |||||||   | ||||| ||||||| || |||| ||| ||||| ||||||||||||||||| |||||||| ||||||||||| ||||    
T  21846168 tggttgtacaattgtactatgtccttttct-tgcgctt-ttaagtggatatgcatcaaatgccttctaattcctttgaaatagtcgttgctctaggcttc 21846265  T
Q  166 tattccttctgcaat 180  Q
     ||||||||||||||    
T  21846266 cattccttctgcaat 21846280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 24157888 - 24157965
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||| |||||||||||||| |||||||||||||| |||||| |||||||| || |||| ||||||||| ||||    
T  24157888 tcttcagtggataagcatccaatgtcttctaattcctctaaaatagtcgttgctccaggcttccattccttctacaat 24157965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 10896465 - 10896398
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||  |||||||| |||| ||||    
T  10896465 ataagcatccaatgccttctaattcttctgaaatagccgttgctccaggattctattctttctacaat 10896398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 201
Target Start/End: Complemental strand, 19643733 - 19643631
Alignment:
Q  101 cttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccg--ttgctctagccttctattccttctgcaatcacgtgtcttcaaataac 198  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||  |  |||||| || ||| |||||||||||||  |  |||||||||||||||    
T  19643733 cttcttcagtggacaagcatccaatgccttctaattcctctaaaatagttgttttgctccagtcttatattccttctgcacacttgtgtcttcaaataac 19643634  T
Q  199 caa 201  Q
    |||    
T  19643633 caa 19643631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 220
Target Start/End: Original strand, 22683496 - 22683603
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaat 212  Q
    |||||||| |||||||||||| ||||| |||||||| |||||||||||  || |||||||||| ||  |  |||||||||||||||||| | || ||| |    
T  22683496 ataagcattcaatgccttctatttcctttgaaatagtcgttgctctagttttatattccttctacacacttgtgtcttcaaataaccaatttaaatgact 22683595  T
Q  213 tcaggttc 220  Q
    ||||||||    
T  22683596 tcaggttc 22683603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 33706100 - 33705962
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| |||||||||||| |||||||| || ||||  ||  | |  || ||| |||||||||||| ||||||||||| ||||||||||| |||||||     
T  33706100 tggagtagtggttgtacaattgtactattatcctttcaatgtccattctctgtggataagcatccaaagccttctaatttctctgaaatagtcgttgctt 33706001  T
Q  158 tagccttctattccttctgcaatcacgtgtcttcaaata 196  Q
     || ||||||||| |||||||  |  |||||||||||||    
T  33706000 cagtcttctattcattctgcacacctgtgtcttcaaata 33705962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 24844204 - 24844267
Alignment:
Q  117 gcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||||||||| || ||||||||||||| |||||||| || ||||||||| |||||||||    
T  24844204 gcatccaatgccttccaactcctctgaaatagtcgttgctccaggcttctattctttctgcaat 24844267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 175
Target Start/End: Complemental strand, 21911153 - 21911046
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||| ||| |||  |||| || ||| |||| ||||||||| |||||||||||||| |||| |||| | |||||||| || ||||    
T  21911153 tggttgtacaattgtactat-gtccttttcctgcact-ctttagtggataagcatcaaatgccttctaatttctctaaaatcgtcgttgctccaggcttc 21911056  T
Q  166 tattccttct 175  Q
    ||||||||||    
T  21911055 tattccttct 21911046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 24303008 - 24302929
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    |||||| || |||||||||| |||||||| ||||||||| || |||| |||||||  | |||| ||||||||||||||||    
T  24303008 tcttcaatgaataagcatcccatgccttcaaattcctctaaattagcggttgctcctggcttccattccttctgcaatca 24302929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 201
Target Start/End: Original strand, 4283 - 4428
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| |||||||||||||||  ||||| |||||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  4283 tagtggagtagtggttgtacaattgtactattgtcattttcctgcg-ttcttcagtggataagcatcaaatgccttctaattcctctgaaatagtcgttg 4381  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
    ||| || ||| ||||||||||| ||||  |||| |||||||||||||    
T  4382 ctccaggcttttattccttctgaaatcttgtgttttcaaataaccaa 4428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 27276277 - 27276081
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgc-ttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgtt 153  Q
    |||||||| | |||||||||||| ||||||||||| |||||||| || |||||||||| |||||||| ||||||||||||||||||||||||||   |||    
T  27276277 tagtggagaagtggttgtacaattgtactattgtcctttctctgtgcattcttcagtggataagcattcaatgccttctaattcctctgaaataattgtt 27276178  T
Q  154 gctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaattcaggttcagactctgaaggcttcagactctggtggct 250  Q
    | |  |  |||||||||||||||||  ||  ||||||||||| ||||||| |||| | |||| || || ||| ||||||||||||||||||||||||    
T  27276177 gtttcacgcttctattccttctgcatacatatgtcttcaaatgaccaaattaactaacttcaagtccatactttgaaggcttcagactctggtggct 27276081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 17262863 - 17262742
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||||||| |||  ||||||| |||||||| |||||||||||||||||||| ||||||||||||||| | ||||    
T  17262863 agtggagtagtggttgtacaattgtactattgtcctttacctgcgct-cttcagtggataagcatccaatgccttctcattcctctgaaatagtcattgc 17262765  T
Q  156 tctagccttctattccttctgca 178  Q
    || || |||||||||||| ||||    
T  17262764 tccaggcttctattccttttgca 17262742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 31589144 - 31589008
Alignment:
Q  54 atagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgtt 153  Q
    ||||||||||| |||||||||||| ||||||| ||| |||  ||||| |||||||||| ||| |||||||||||||| ||||||||||||| |||| |||    
T  31589144 atagtggagtagtggttgtacaattgtactat-gtccttttcctgcg-ttcttcagtggatacgcatccaatgccttttaattcctctgaattagctgtt 31589047  T
Q  154 gctctagccttctattccttctgcaatcacgtgtcttca 192  Q
    |||| || ||||||||||||||||||| | |||||||||    
T  31589046 gctccaggcttctattccttctgcaatgatgtgtcttca 31589008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 39799011 - 39798877
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| | ||||| |||  || |||||||| ||| |||| ||||||||||||||| |||||||| ||||||||||| ||||||    
T  39799011 agtggagtagtggttgtacaattgcactat-gtcccttttctgcgct-cttaagtgaataagcatccaatgctttctaatttctctgaaatagtcgttgc 39798914  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttca 192  Q
    || |||||| ||||||||||||||| | |||||||||    
T  39798913 tccagccttttattccttctgcaattatgtgtcttca 39798877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 34638460 - 34638581
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| | ||||||||| ||| |||||||| |||||||| |||| |||||||||||||| |||||||||||| ||||||||||    
T  34638460 agtggagtagtggttgtacaattgcactattgtccttt-tctgcgct-cttcagtggataaacatccaatgccttcaaattcctctgaattagccgttgc 34638557  T
Q  156 tctagccttctattccttctgcaa 179  Q
    || || |||| ||||||| |||||    
T  34638558 tccaggcttccattccttatgcaa 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 58 - 192
Target Start/End: Original strand, 27057329 - 27057461
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| |||||||||||| ||| ||| ||| ||| | |||||| |||||||| |||  ||||||||||||||||||||||||||||||| | ||||||    
T  27057329 tggagtagtggttgtacaattgtattat-gtcctttttttgcgct-cttcagtggatagtcatccaatgccttctaattcctctgaaatagtcattgctc 27057426  T
Q  158 tagccttctattccttctgcaatcacgtgtcttca 192  Q
    ||| ||| ||||||||||||||| | |||||||||    
T  27057427 tagtcttttattccttctgcaatgatgtgtcttca 27057461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 34637549 - 34637649
Alignment:
Q  79 gtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgca 178  Q
    |||| |||||| |||||||| ||| ||| |||| |||||||||||||||||| |||||||||| |||||| ||| |||||||  ||||||||||||||||    
T  34637549 gtaccattgtcctttctctgagctcctttagtggataagcatccaatgccttttaattcctctaaaatagtcgtcgctctaggattctattccttctgca 34637648  T
Q  179 a 179  Q
    |    
T  34637649 a 34637649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 26119944 - 26119832
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||| ||| |||   |||||| |||||||| ||||||||||||||||||||||||||||| |||||| |||||||| || ||||    
T  26119944 tggttgtacaattgtactat-gtctttttcttgcgct-cttcagtggataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttc 26119847  T
Q  166 tattccttctgcaat 180  Q
     ||||||| ||||||    
T  26119846 cattccttttgcaat 26119832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 20567814 - 20567939
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctct-gcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    ||||||||| |||||||||||| ||||||||||| ||| ||| ||||| | |||||  ||||||||||||||||||| |||||||||||| ||| |||||    
T  20567814 agtggagtagtggttgtacaattgtactattgtccttt-tctagcgct-catcagtcgataagcatccaatgccttcaaattcctctgaagtagtcgttg 20567911  T
Q  155 ctctagccttctattccttctgcaatca 182  Q
    ||| ||  ||  ||||||||||||||||    
T  20567912 ctccaggattgcattccttctgcaatca 20567939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 23589770 - 23589849
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||| |||||||| || | || ||||||||||||||||    
T  23589770 tctttagtggataaccatccaatgccttctaattcctctgaaatagtcgttgctccaggcatccattccttctgcaatca 23589849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 20237457 - 20237391
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaa 179  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||| |||||    
T  20237457 ataagcatcaaatgccttctaattcctctgaaatagtcgttgctcaaggcttctattccttttgcaa 20237391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 20969209 - 20969345
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| |||||||   | |||| |||| || ||| |||| ||||||||||||||| ||||||||||||| |||||| |||||     
T  20969209 agtggagtagtggttgtacaattgtactatgtccctttc-ctgcact-cttaagtggataagcatccaatgctttctaattcctcttaaatagtcgttga 20969306  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaaa 194  Q
    | ||| |||||||||||||| || | | |||||||||||    
T  20969307 tgtaggcttctattccttctacagtgatgtgtcttcaaa 20969345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 13692475 - 13692552
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||| ||| |||||||| ||||| |||||||||||||| |||||| | |||||| || |||||||||||||||||||    
T  13692475 tcttctgtggataagcattcaatgtcttctaattcctctaaaatagtcattgctcgaggcttctattccttctgcaat 13692552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 16607581 - 16607647
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    |||||| |||||||||||| |||||||||||| |||||||||||| || |||||||| ||||||||||    
T  16607581 ataagcttccaatgccttcaaattcctctgaattagccgttgctccaggcttctatt-cttctgcaat 16607647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 2152991 - 2152916
Alignment:
Q  102 ttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgc 177  Q
    |||||| ||| |||||||| ||||| |||| ||||| ||||||||||  ||||||| || ||||||||||||||||    
T  2152991 ttcttctgtgaataagcattcaatgtcttccaattcttctgaaatagttgttgctccaggcttctattccttctgc 2152916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 22586085 - 22585994
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaa 194  Q
    |||| |||| |||||||| ||||||||||| | || ||| |||||| |||||||| || ||||||||||||||||  ||  |||||||||||    
T  22586085 tctttagtggataagcattcaatgccttcttagtcttctaaaatagtcgttgctccaggcttctattccttctgctgtcttgtgtcttcaaa 22585994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 22766675 - 22766550
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||||||| |||  ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||    
T  22766675 agtggagtagtggttgtacaattgtactattgtccttttcctgcgct-cttcagtggataagcatccaatgccttcaaattcctctgaattagccgttgc 22766577  T
Q  156 tctagccttctattccttctgcaatca 182  Q
    ||||| |||| ||||||||||||||||    
T  22766576 tctaggcttccattccttctgcaatca 22766550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 197
Target Start/End: Original strand, 315099 - 315238
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||||||| |||   |||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  315099 agtggagtagtggttgtacaat-gtactattgtccttttcatgcgct-cttcagtggataagcattcaatgccttctaattcctctgaaatagccgttgc 315196  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaaataa 197  Q
    || ||  || ||||||| ||||||||| ||||||||||||||    
T  315197 tccaggtttttattcctcctgcaatcatgtgtcttcaaataa 315238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 17762251 - 17762084
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||||| ||||||||||||  |||||||||| ||||||||  |||||||| || |||| |||| ||||||||||||||||||  |||||  |||    
T  17762251 aatagtggagtagtggttgtacaattttactattgtcctttctctgaccttcttcactggataaacatcaaatgccttctaattcctccaaaataatcgt 17762152  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaattcaggttc 220  Q
    ||||| |  |||||||||||| | ||| |  |||||||||||||||||| | |||||| |||||||||    
T  17762151 tgctccaagcttctattccttatacaaacttgtgtcttcaaataaccaatttaactgacttcaggttc 17762084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 19063571 - 19063404
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||||| ||||||||||||  |||||||||| ||||||||  |||||||| || |||| |||| ||||||||||||||||||  |||||  |||    
T  19063571 aatagtggagtagtggttgtacaattttactattgtcctttctctgaccttcttcactggataaacatcaaatgccttctaattcctccaaaataatcgt 19063472  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaattcaggttc 220  Q
    ||||| |  |||||||||||| | ||| |  |||||||||||||||||| | |||||| |||||||||    
T  19063471 tgctccaagcttctattccttatacaaacttgtgtcttcaaataaccaatttaactgacttcaggttc 19063404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 21317404 - 21317542
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| ||| ||| ||| |||  ||||||| |||||| | ||||||||| |||||||| |||||| ||| |||||| |||||    
T  21317404 tagtggagtagtggttgtacaattgtattat-gtccttttcctgcgct-cttcagaggataagcatcaaatgccttataattcatctaaaatagtcgttg 21317501  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttcaaat 195  Q
    |||||| ||||||||||||||||||||| ||||| ||||||    
T  21317502 ctctaggcttctattccttctgcaatcatgtgtcatcaaat 21317542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 8729141 - 8729015
Alignment:
Q  56 agtggagtactggtt-gtacaatcgtactattgtcatttctc-tgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgtt 153  Q
    ||||||||| ||||| ||||||| ||||||| ||| ||| || |||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  8729141 agtggagtagtggtttgtacaattgtactat-gtcctttttcatgcgct-cttcagtggataagcatccaatgccttctaattcctctaaaatagtcgtt 8729044  T
Q  154 gctctagccttctattccttctgcaatca 182  Q
    |||| || |||| ||||||||||||||||    
T  8729043 gctccaggcttccattccttctgcaatca 8729015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 9081028 - 9080902
Alignment:
Q  56 agtggagtactggtt-gtacaatcgtactattgtcatttctc-tgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgtt 153  Q
    ||||||||| ||||| ||||||| ||||||| ||| ||| || |||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  9081028 agtggagtagtggtttgtacaattgtactat-gtcctttttcatgcgct-cttcagtggataagcatccaatgccttctaattcctctaaaatagtcgtt 9080931  T
Q  154 gctctagccttctattccttctgcaatca 182  Q
    |||| || |||| ||||||||||||||||    
T  9080930 gctccaggcttccattccttctgcaatca 9080902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 17697633 - 17697746
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||||||| ||| |||| | ||||||  || ||||||||||||||||||| |||||||||||| ||||  |||||| || ||||    
T  17697633 tggttgtacaattgtactattgtcgtttttctgtg-ttcttctatggataagcatccaatgccttcaaattcctctgaattagctattgctccaggcttc 17697731  T
Q  166 tattccttctgcaat 180  Q
    |||||||||||||||    
T  17697732 tattccttctgcaat 17697746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 27851508 - 27851678
Alignment:
Q  9 agcagagacacaactgtagcagtgctatgcgcatacatgaacataatagtggagtactggttgtacaatcgtactattgtcatttctctgcgc-ttcttc 107  Q
    |||||||||| |  ||||| ||| |||||||||| |||||    | |||| ||||| |||||||||||| ||||||||||| ||||||||  | ||||||    
T  27851508 agcagagacatagttgtagtagtactatgcgcatgcatgagtggagtagtagagtagtggttgtacaattgtactattgtcctttctctgtccattcttc 27851607  T
Q  108 agtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgca 178  Q
    || | |||||||||||||| ||||||| | |||||||||||  ||||||| |  |||||||||||||||||    
T  27851608 agcggataagcatccaatgtcttctaacttctctgaaatagttgttgctccatgcttctattccttctgca 27851678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 16305306 - 16305162
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||  ||| ||||||| |||  ||||||| ||| |||| ||||| ||||||||||||||| |||||||||||||  | ||||    
T  16305306 agtggagtagtggttgtacaaatgtaatattgtccttttcctgcgct-ctttagtgcataagtatccaatgccttctatttcctctgaaatattcattgc 16305208  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
    |  || |||||||||||||||||| |   |||||||||||||||||    
T  16305207 ttcaggcttctattccttctgcaaacttatgtcttcaaataaccaa 16305162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 182
Target Start/End: Complemental strand, 16794416 - 16794302
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||| ||| ||| |||||||| ||||| || ||||||||||||||||| |||||||||||||||||| | |||||  || ||||    
T  16794416 tggttgtacaattgtactat-gtcctttttctgcgct-cttcaatggataagcatccaatgcctcctaattcctctgaaatagtcattgcttcaggcttc 16794319  T
Q  166 tattccttctgcaatca 182  Q
     ||||||||||||||||    
T  16794318 cattccttctgcaatca 16794302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 11078665 - 11078797
Alignment:
Q  60 gagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctcta 159  Q
    ||||| ||| |||||||| ||||||||||| ||| ||| |||| ||| |||| ||||||||| |||||||||| |||||||| ||| ||  ||||||| |    
T  11078665 gagtagtggatgtacaattgtactattgtcctttttctacgct-cttaagtggataagcatctaatgccttctgattcctctaaaagagtagttgctcca 11078763  T
Q  160 gccttctattccttctgcaatcacgtgtcttcaa 193  Q
    | ||||||||||||| |||| | |||||||||||    
T  11078764 ggcttctattccttccgcaaactcgtgtcttcaa 11078797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 13699427 - 13699508
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaa 194  Q
    |||||||||||||||||||| |||||||||||||||  ||||||| || ||||| ||| ||||||||||| |||||||||||    
T  13699427 ataagcatccaatgccttcttattcctctgaaatagttgttgctccagacttcttttctttctgcaatcatgtgtcttcaaa 13699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 19198023 - 19197897
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    ||||| |||| ||||||||||||  |||||||||| |||   |||  ||||||| || |||| |||||||||||||| |||||||||||| ||| |||||    
T  19198023 tagtgaagtagtggttgtacaattttactattgtccttttgttgca-ttcttcaatggataatcatccaatgccttcaaattcctctgaagtagtcgttg 19197925  T
Q  155 ctctagccttctattccttctgcaatca 182  Q
    ||| || |||| ||||||||||||||||    
T  19197924 ctccaggcttccattccttctgcaatca 19197897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 4243314 - 4243191
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| |||||||   |||||| |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||    
T  4243314 agtggagtagtggttgtacaattgtactat-gtcattttcttgcgct-cttcagtggataagcattcaatgcctt-taattcctctgaaatagtcgttgc 4243218  T
Q  156 tctagccttctattccttctgcaatca 182  Q
    || || ||||  || ||| ||||||||    
T  4243217 tccagacttccttttcttatgcaatca 4243191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 11513850 - 11514015
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    ||||||| || |||||||||||| ||||||||||| |||| ||   ||||||| ||| ||||||||  |||||||| |||||||||| |||||| ||||     
T  11513850 tagtggactagtggttgtacaattgtactattgtcctttccctaaccttcttcggtggataagcatgaaatgccttataattcctcttaaatagtcgtta 11513949  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaattcaggttc 220  Q
    ||| || ||| |||||||| | ||  |  ||| ||||||||||||||  ||||| | |||||||||    
T  11513950 ctccagtcttatattccttatacacacttgtgccttcaaataaccaataaaactaacttcaggttc 11514015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 13653929 - 13654063
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| | |||||||||| ||| ||| ||| ||| |||| | |||||||||| ||||  ||| ||||||||||||||||||||||||||  ||||    
T  13653929 tagtggagtagttgttgtacaattgtattat-gtcctttttctgtg-ttcttcagtggataataatctaatgccttctaattcctctgaaatagttgttg 13654026  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttca 192  Q
    ||| || |||||||||| |||||||| | |||||||||    
T  13654027 ctccaggcttctattcc-tctgcaatgatgtgtcttca 13654063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 16882350 - 16882427
Alignment:
Q  105 ttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| |||| |  || |||| ||||||||||||||||    
T  16882350 ttcagtggataagcatccaatgccttttaattcctctgaaatagctgttgttgcaggcttccattccttctgcaatca 16882427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 192
Target Start/End: Original strand, 20418291 - 20418380
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttca 192  Q
    ||||||| | ||||| |||||||||||||||||||||||||||||| |||||||| || |||| ||| ||||| |||||| |||| ||||    
T  20418291 tcttcagaggataagtatccaatgccttctaattcctctgaaatagtcgttgctccagacttccatttcttctacaatcatgtgtattca 20418380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 3087596 - 3087695
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttc-aaataaccaa 201  Q
    |||| |||| |||||||| |||||  ||||||||||||||||| ||  ||||||  || ||||||||||||||||||||| |||||||| ||||||||||    
T  3087596 tctttagtggataagcattcaatgtattctaattcctctgaaagagttgttgcttcaggcttctattccttctgcaatcatgtgtcttcgaaataaccaa 3087695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 10851868 - 10851945
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||| ||||||||||||||| |||||| |||| ||||||||||||| ||| |  ||| |||||||||||||||    
T  10851868 tcttcagtgaataagcatccaatgctttctaactcctttgaaatagccgttactccaagcttttattccttctgcaat 10851945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 175
Target Start/End: Original strand, 14007584 - 14007703
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| | ||||||||| |||  ||||||| ||| |||| |||| |||||||||||||| ||||||||| || ||||| |||    
T  14007584 tagtggagtagtggttgtacaattgcactattgtccttttcctgcgct-ctttagtggataaacatccaatgccttcaaattcctctaaattagccattg 14007682  T
Q  155 ctctagccttctattccttct 175  Q
     |  || |||| |||||||||    
T  14007683 ttgcaggcttccattccttct 14007703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 13932005 - 13932124
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaat 212  Q
    ||||||||| ||||||||||||||||| ||| ||||||||  ||| ||  ||| ||||||||||||| |  |||||||||||||||  ||  |||| | |    
T  13932005 ataagcatctaatgccttctaattcctttgagatagccgtcactccaggtttccattccttctgcaaacttgtgtcttcaaataacagaaataactaact 13932104  T
Q  213 tcaggttcagactctgaagg 232  Q
     |||||||||||||| ||||    
T  13932105 ccaggttcagactctaaagg 13932124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 14072704 - 14072825
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||  |||||||||||  ||||||||||| |||  | ||| ||||||| || ||||||||||||||||||| ||||||||| || ||  ||||||    
T  14072704 agtggagtggtggttgtacaagtgtactattgtccttttcccgcg-ttcttcaatggataagcatccaatgccttcaaattcctctaaattattcgttgc 14072802  T
Q  156 tctagccttctattccttctgca 178  Q
    || || || | ||||||||||||    
T  14072803 tccaggctcccattccttctgca 14072825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 157
Target Start/End: Original strand, 15647761 - 15647863
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    ||||| |||| |||||||| ||| |||||| |||| ||||| ||| ||| | ||||| |||||||||||| ||| |||||||||||| |||||| | |||    
T  15647761 tagtgaagtagtggttgtataattgtactactgtcctttctttgcccttatccagtggataagcatccaaagccatctaattcctcttaaatagtcattg 15647860  T
Q  155 ctc 157  Q
    |||    
T  15647861 ctc 15647863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 14077449 - 14077405
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaata 147  Q
    ||||||||| |||||||||||||| ||||||||||||||||||||    
T  14077449 tcttcagtggataagcatccaatgtcttctaattcctctgaaata 14077405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 27374831 - 27374909
Alignment:
Q  102 ttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||| |||| | ||||||||||||||||||||||||||| ||| |  ||||||||||| |||| || |||||| ||||    
T  27374831 ttctttagtggagaagcatccaatgccttctaattcctctaaaacactcgttgctctaggcttccataccttctacaat 27374909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 13931957 - 13932000
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctg 98  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||    
T  13931957 tagtggagtagtggttgtacaattgtactattgtcgtttctctg 13932000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 12397140 - 12397207
Alignment:
Q  113 ataagcatccaatgccttcta-attcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||| ||| ||||| | ||||||||||| ||||||||||| ||| |||||||| ||||||||||    
T  12397140 ataagcatcaaataccttcaacattcctctgaattagccgttgctttaggcttctatt-cttctgcaat 12397207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 241
Target Start/End: Complemental strand, 17812402 - 17812213
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||||| |||||||||||   |||||||||| ||||||||  || |||||| | ||||||||||||||||||||||||||||||||||||||||    
T  17812402 aatagtggagtagtggttgtacaactttactattgtcctttctctgttctccttcagcggataagcatccaatgccttctaattcctctgaaatagccgt 17812303  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaataaactgaattcaggttcagactctgaagg-cttcagact 241  Q
    ||||| |  |||||||| |||||||||    ||||||||||||| |  ||  || ||| ||||| ||||||||| ||||| |||||||||    
T  17812302 tgctccaaacttctatttcttctgcaaatttgtgtcttcaaatagcagaaataattgacttcagtttcagactccgaaggtcttcagact 17812213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 20571103 - 20570980
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| ||||||| ||| ||| |||| ||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||    
T  20571103 tagtggagtagtggttgtacaattgtactat-gtcctttttctgtgct-cttcagtggataagcatcaaatgccttctaattcctctgaaatagtcgttg 20571006  T
Q  155 ctctagccttctattccttctgcaat 180  Q
    ||| || |||||||||||||| ||||    
T  20571005 ctccagacttctattccttctacaat 20570980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 20577339 - 20577487
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaa 202  Q
    |||||| || ||||| |||||||||||||||||| ||||||||||||| |||||  || |||||||| ||||||||  |  ||||||||||| ||| |||    
T  20577339 tcttcattggataagaatccaatgccttctaatttctctgaaatagccattgcttcaggcttctatttcttctgcagacttgtgtcttcaaaaaacaaaa 20577438  T
Q  203 taaactga-attcaggttcagactctgaaggcttcagactctggtggct 250  Q
    |||| |||  |||||||||| |||||||||| |||||||||||||||||    
T  20577439 taaattgactttcaggttcaaactctgaaggtttcagactctggtggct 20577487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 180
Target Start/End: Original strand, 13027817 - 13027910
Alignment:
Q  86 tgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||    
T  13027817 tgtcattttcctgcgct-cttcagtggataagcatccaatgccttctaattcctctgaaatagccgttgctccaggcttccattccttctgcaat 13027910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 18394543 - 18394665
Alignment:
Q  58 tggagtactggttgtacaatcgtactatt-gtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgct 156  Q
    ||||||| |||||||||||| |||||||| ||| |||||||||||| |||||||| |||||| || |||||||| ||||||||||||||| | |||||||    
T  18394543 tggagtagtggttgtacaattgtactatttgtcctttctctgcgctccttcagtggataagcctcaaatgccttataattcctctgaaatggtcgttgct 18394642  T
Q  157 ctagccttctattccttctgcaa 179  Q
    | || |||||||||||| |||||    
T  18394643 ccagacttctattccttatgcaa 18394665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 2651808 - 2651942
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| ||| |||  || |||| |||||||| |||||||| ||||||||||||||||||||||||||| |||| |    
T  2651808 agtggagtagtggttgtacaattgtactat-gtccttttcctacgct-cttcagtggataagcattcaatgccttctaattcctctgaaatagtcgttac 2651905  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttca 192  Q
    || |  |||||||||||| |||||| | |||||||||    
T  2651906 tccaagcttctattccttttgcaatgatgtgtcttca 2651942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 14357189 - 14357100
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttca 192  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||| | |||||| || |||||||||||| |||||| | |||||||||    
T  14357189 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctccaggcttctattccttttgcaatgatgtgtcttca 14357100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 180
Target Start/End: Complemental strand, 14902561 - 14902440
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| ||||||| || ||||| ||| |||| | |||||| || ||||||||||||||||| |||||| ||||||    
T  14902561 agtggagtagtggttgtacaattgtactat-gtcattt-tcagcgct-ctttagtggagaagcattcactgccttctaattcctctaaaatagtcgttgc 14902465  T
Q  156 tctagccttctattccttctgcaat 180  Q
    || |  |||||||||||||||||||    
T  14902464 tccaagcttctattccttctgcaat 14902440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 18774057 - 18774179
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||| |||  || |||| ||||||| ||| |||| ||||||||| ||||||||||||||||||  ||||||  |||||    
T  18774057 agtggagtagtggttgtacaattgtattatgttcttttc-ctgcgct-cttaagtggataagcatctaatgccttctaattcctcctaaatagttgttgc 18774154  T
Q  156 tctagccttctattccttctgcaat 180  Q
    ||||| | |||||||||||||||||    
T  18774155 tctaggcatctattccttctgcaat 18774179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 10249879 - 10249946
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    |||||||||||||| |||| ||||||||| || |||  |||||||||| |||||||||||||||||||    
T  10249879 ataagcatccaatgacttcaaattcctcttaattagttgttgctctagacttctattccttctgcaat 10249946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 16324574 - 16324523
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||| || |||||||| ||||||||||||||||||||||||||| |||||    
T  16324574 tcttcaatggataagcatacaatgccttctaattcctctgaaatagtcgttg 16324523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 41114811 - 41114770
Alignment:
Q  115 aagcatccaatgccttctaattcctctgaaatagccgttgct 156  Q
    ||||||||||||||||| ||||| | ||||||||||||||||    
T  41114811 aagcatccaatgccttcaaattcatttgaaatagccgttgct 41114770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 19889086 - 19889020
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaa 134  Q
    |||||||||||||||||||| ||| |||  ||||||| || ||||| |||| |||||||||||||||||    
T  19889086 tggttgtacaatcgtactat-gtccttttcctgcgct-ctccagtggataaacatccaatgccttctaa 19889020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 26185724 - 26185870
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    ||||||||| || |||||||||||| ||||||||||| ||| ||||| || ||| |||| ||||||||| ||||||||||||||| ||||||||||||||    
T  26185724 aatagtggaatagtggttgtacaat-gtactattgtcctttttctgcact-ctttagtggataagcatctaatgccttctaattcatctgaaatagccgt 26185821  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
    || || ||  ||||||||||| || ||||||||||||||||||||||||    
T  26185822 tgttccagatttctattccttttgtaatcacgtgtcttcaaataaccaa 26185870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 66 - 201
Target Start/End: Complemental strand, 18026891 - 18026756
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||||||| ||||| ||  | ||||||||| ||||||||||||||||||||||||||||||||||||  ||||||| || ||||    
T  18026891 tggttgtacaattgtactattgtcctttctttgtccatcttcagtggataagcatccaatgccttctaattcctctgaaatagttgttgctccaggcttc 18026792  T
Q  166 tattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
    || ||||||||||| |    ||||||||||||||||    
T  18026791 tactccttctgcaaactttagtcttcaaataaccaa 18026756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 24728688 - 24728568
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| ||| |||  |||| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  24728688 agtggagtagtggttgtacaattgtactat-gtccttttcctgcact-cttcagtggataagcatccaatgccttctaattcctctgaaatagccattgc 24728591  T
Q  156 tctagccttctattccttctgca 178  Q
     ||||  ||| ||||||||||||    
T  24728590 actaggtttccattccttctgca 24728568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 53 - 194
Target Start/End: Complemental strand, 31127478 - 31127339
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||  | ||||||||||||  |||||||||  ||||  |||||| ||||||||  ||||||||||||||||| ||||||||||||||||  |||    
T  31127478 aatagtggaacagtggttgtacaattatactattgttctttca-tgcgct-cttcagtggttaagcatccaatgccttataattcctctgaaatatacgt 31127381  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaa 194  Q
    || || || |||||||||||| |||||||| |||||||||||    
T  31127380 tgttccaggcttctattccttttgcaatcatgtgtcttcaaa 31127339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 178
Target Start/End: Complemental strand, 30451670 - 30451548
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    ||||||||||||||||||| ||| ||||||||||  ||| |||||||| |||||||| ||||||||||||||||||| |||| || ||||||| |||||     
T  30451670 tagtggagtactggttgtataattgtactattgttctttttctgcgct-cttcagtggataagcatccaatgccttcaaatttctatgaaataaccgtta 30451572  T
Q  155 ctctagccttctattccttctgca 178  Q
    ||  || |||| ||||||| ||||    
T  30451571 cttcaggcttccattccttatgca 30451548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 24398722 - 24398806
Alignment:
Q  106 tcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtctt 190  Q
    |||||| ||||||||||||||||||||||||||| | |||||| |||||||| || ||||||| ||||||||||| | |||||||    
T  24398722 tcagtggataagcatccaatgccttctaattcctttaaaatagtcgttgctccaggcttctataccttctgcaatgatgtgtctt 24398806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 25930546 - 25930613
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    |||||||||||||| |||| |||||||||||| |||||||||||| || |||||||||||||||||||    
T  25930546 ataagcatccaatgacttcaaattcctctgaattagccgttgctccaggcttctattccttctgcaat 25930613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 176
Target Start/End: Complemental strand, 16462773 - 16462665
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||| ||| |||  ||||||| || ||||| ||||||||||||||||||| |||||||||||  |||||||| ||| || ||||    
T  16462773 tggttgtacaattgtactat-gtccttttcctgcgct-ctccagtggataagcatccaatgccttcaaattcctctgatttagccgtttctccaggcttc 16462676  T
Q  166 tattccttctg 176  Q
    |||||||||||    
T  16462675 tattccttctg 16462665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 23006189 - 23006065
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| ||| |||   ||| || ||||| || ||||||||| |||||||||||||||||||||||||| |||| |    
T  23006189 agtggagtagtggttgtacaattgtactat-gtctttttcttgcact-cttcaatggataagcatctaatgccttctaattcctctgaaatagtcgttcc 23006092  T
Q  156 tctagccttctattccttctgcaatca 182  Q
    ||||| |||| || |||| ||||||||    
T  23006091 tctaggcttccataccttttgcaatca 23006065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 23782177 - 23782301
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| ||| |||   ||| || ||||| || ||||||||| |||||||||||||||||||||||||| |||| |    
T  23782177 agtggagtagtggttgtacaattgtactat-gtctttttcttgcact-cttcaatggataagcatctaatgccttctaattcctctgaaatagtcgttcc 23782274  T
Q  156 tctagccttctattccttctgcaatca 182  Q
    ||||| |||| || |||| ||||||||    
T  23782275 tctaggcttccataccttttgcaatca 23782301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 32335836 - 32335961
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||||||| ||| | |  | | ||| |||||||| ||||||||| ||| ||||| ||||| |||||||||| ||||||    
T  32335836 agtggagtagtggttgtacaattgtactatcgtcctattccagagct-cttcagtggataagcatctaatcccttcaaattcttctgaaatagtcgttgc 32335934  T
Q  156 tctagccttctattccttctgcaatca 182  Q
    || || |||| ||||||||||||||||    
T  32335935 tccaggcttccattccttctgcaatca 32335961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 13145193 - 13145280
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtctt 190  Q
    |||| |||| |||||||| |||||||||||||||| |||||||||| ||||||   || ||||||||||||||||||| | |||||||    
T  13145193 tctttagtggataagcattcaatgccttctaattcatctgaaatagtcgttgcatcaggcttctattccttctgcaatgatgtgtctt 13145280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 18172121 - 18172042
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    |||||| || ||||||||  |||| ||||||||||||||||||||| ||||||||||| |||| || |||||||||||||    
T  18172121 tcttcaatggataagcatttaatgtcttctaattcctctgaaatagtcgttgctctaggcttccataccttctgcaatca 18172042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 173
Target Start/End: Complemental strand, 10704683 - 10704567
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| |||||||   | |||  || |||| |||| ||| |||||||| ||||| |||||||||||| | |||||| ||||||    
T  10704683 agtggagtagtggttgtacaattgtactatgccctttttcctacgct-cttcggtggataagcattcaatgtcttctaattcctttaaaatagtcgttgc 10704585  T
Q  156 tctagccttctattcctt 173  Q
    ||||| ||||||||||||    
T  10704584 tctaggcttctattcctt 10704567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 178
Target Start/End: Original strand, 7812037 - 7812148
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| |||| |||||| ||| |||   | ||||| ||| ||||||||||||||||||  |||||||||||| ||| |||||||| |  ||||    
T  7812037 tggttgtacaattgtaccattgtccttt-tctaatcctcttcggtgaataagcatccaatgcctttaaattcctctgaattagtcgttgctcaaagcttc 7812135  T
Q  166 tattccttctgca 178  Q
    |||||||||||||    
T  7812136 tattccttctgca 7812148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 15551991 - 15552083
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctg-cgcttcttcagtgtataagcatccaatgccttctaattcctctgaaata 147  Q
    ||||||||| |||||||||||| |||||||||  ||||||||| |  || ||||||| |||| ||||||||| ||| ||||||||||||||||    
T  15551991 agtggagtagtggttgtacaattgtactattgcgatttctctgaccatttttcagtggataaacatccaatgtcttttaattcctctgaaata 15552083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 17867580 - 17867661
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcct 139  Q
    ||||||||| | |||| ||||| ||||||| ||| |||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  17867580 agtggagtagtagttgcacaattgtactat-gtcctttccctgcgct-cttcagtggataagcatccaatgccttctaattcct 17867661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 17877363 - 17877444
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcct 139  Q
    ||||||||| | |||| ||||| ||||||| ||| |||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  17877363 agtggagtagtagttgcacaattgtactat-gtcctttccctgcgct-cttcagtggataagcatccaatgccttctaattcct 17877444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 19875895 - 19875974
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    |||| |||| ||||||||||| |||||| ||||||||||||||||||| || ||| || ||||  |||||||||||||||    
T  19875895 tctttagtggataagcatccattgccttgtaattcctctgaaatagccattactccagacttccgttccttctgcaatca 19875974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 21035010 - 21035136
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||| | |||||||||||| ||||| ||  | |||  ||||| ||||| |||| ||||||||||||||| ||| ||||||| |||| ||| |||||    
T  21035010 tagtggagcagtggttgtacaattgtactgttacccttttcctgcg-ttctttagtgaataagcatccaatgctttcaaattcctatgaattagtcgttg 21035108  T
Q  155 ctctagccttctattccttctgcaatca 182  Q
    ||| |  |||| ||||||||||||||||    
T  21035109 ctccaagcttccattccttctgcaatca 21035136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 24718830 - 24718751
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    ||||||||| ||||||||||||||||||||||||  | ||||||||||| ||| |||| |||| ||||| || |||||||    
T  24718830 tcttcagtggataagcatccaatgccttctaattattttgaaatagccgctgcactaggcttccattccatcagcaatca 24718751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 25595947 - 25596018
Alignment:
Q  108 agtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaa 179  Q
    ||||| |||||||| ||||| ||||||||||| |||||||| |||||||| || |||||||||||| |||||    
T  25595947 agtgtttaagcatcaaatgcattctaattcctttgaaatagtcgttgctccagacttctattccttatgcaa 25596018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 12348120 - 12348234
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||| ||||||||||| ||     |||||||  | |||||||||||||| |||| ||||||| |||| ||||| |||||| || ||||    
T  12348120 tggttgtacaattgtattattgtcatttttccaacgttcttcaagggataagcatccaatgacttcaaattcctatgaattagccattgctccaggcttc 12348219  T
Q  166 tattccttctgcaat 180  Q
    |||||||| ||||||    
T  12348220 tattccttttgcaat 12348234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 23231243 - 23231287
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaata 147  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||||    
T  23231243 tcttccgtggataagcatccaatgccttctaatttctctgaaata 23231287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 23298019 - 23298086
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||| ||| |||| |||| ||||||| |||||||||| |||||| || ||| |||||||||||||||    
T  23298019 ataagaatcaaatgtcttccaattcctatgaaatagccattgctccagacttttattccttctgcaat 23298086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 17445746 - 17445692
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| | || ||||| ||||| ||||||||||||||||||||| ||||||||    
T  17445746 tcttcagcggatcagcattcaatgtcttctaattcctctgaaatagtcgttgctc 17445692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 19625881 - 19625925
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    |||||||| |||||||||| ||||||||| | |||||||||||||    
T  19625881 ataagcattcaatgccttcaaattcctctaatatagccgttgctc 19625925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 201
Target Start/End: Complemental strand, 21683258 - 21683115
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| ||||| |||||| ||||||| ||| |||  ||||||| ||||| || ||||||||||||||||||||||||||| |||||||| ||||||    
T  21683258 agtggagtagtggttatacaattgtactat-gtccttttcctgcgct-cttcactggataagcatccaatgccttctaattcctttgaaatagtcgttgc 21683161  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
    |  || ||||||||||||||||||||  ||||||||||||||||||    
T  21683160 ttcagacttctattccttctgcaatcttgtgtcttcaaataaccaa 21683115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 18517235 - 18517101
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| |||||||   | ||||| |||||| ||||| ||  |||||||||||||||||||||||||| |||||||| ||||||    
T  18517235 agtggagtaatggttgtacaattgtactatgtccttttct-tgcgct-cttcaatgattaagcatccaatgccttctaattcctttgaaatagtcgttgc 18517138  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttca 192  Q
    || || ||||||||||||||| ||| | |||||||||    
T  18517137 tccaggcttctattccttctgtaatgatgtgtcttca 18517101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 53 - 201
Target Start/End: Original strand, 26703567 - 26703714
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||||| |||||||||||  ||| |||| || ||| |||||||| |||||||| |||||||| ||||| ||||||||| ||||||||||||| |    
T  26703567 aatagtggagtaatggttgtacaaatgtagtattatcctttttctgcgct-cttcagtggataagcatacaatgtcttctaatttctctgaaatagccat 26703665  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
     | || || ||||| |||||||||||| |  |||||||| |||||||||    
T  26703666 cgttccaggcttctgttccttctgcaaacttgtgtcttccaataaccaa 26703714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 23054392 - 23054504
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| ||||||| ||| |||  ||||||| ||||| || |||| ||||||||||||||||||| ||||||||||| |||||||| || ||||    
T  23054392 tggttgtacaattgtactat-gtccttttcctgcgct-cttcattggataaacatccaatgccttctaatttctctgaaatagtcgttgctccaggcttc 23054489  T
Q  166 tattccttctgcaat 180  Q
    |||||||||||||||    
T  23054490 tattccttctgcaat 23054504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 18130039 - 18129951
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttca 192  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||| || ||| || ||| ||||||||||||||| |||||||||||    
T  18130039 tcttcagtggataagcatccaataccttctaattcctctgaaatagcc-ttactccaggcttttattccttctgcaatgacgtgtcttca 18129951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 2819340 - 2819253
Alignment:
Q  109 gtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaata 196  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |||| || ||  ||||| |||||||    
T  2819340 gtgtataagcatctaatgccttctaattcctctgaaatagccgttgctccagtcttctattcattcttcactcttgtgtcatcaaata 2819253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 16478760 - 16478658
Alignment:
Q  91 tttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtctt 190  Q
    ||||| |||||| |||||||  |||||||||||||||||||||||| ||||||||||| |||||||| ||  || |||| |||||||||||  |||||||    
T  16478760 tttctttgcgctccttcagtagataagcatccaatgccttctaatttctctgaaatagtcgttgctccaggtttatatttcttctgcaatcttgtgtctt 16478661  T
Q  191 caa 193  Q
    |||    
T  16478660 caa 16478658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 16869978 - 16870101
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctc-tgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    ||||||||| |||||||||||| ||||||| ||| ||| || |||||| ||| |||| |||||||||||||||||||||||||||||||||||||  |||    
T  16869978 agtggagtaatggttgtacaattgtactat-gtcctttttcctgcgct-ctttagtggataagcatccaatgccttctaattcctctgaaatagcaattg 16870075  T
Q  155 ctctagccttctattccttctgcaat 180  Q
    ||| || |||  |||| |||||||||    
T  16870076 ctccaggctttcattcattctgcaat 16870101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 194
Target Start/End: Complemental strand, 26280079 - 26279988
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaa 194  Q
    |||||| || |||||||||||||| |||||||||| |||||||||| |||||||| || |||||||||||||| || | | |||||||||||    
T  26280079 tcttcaatggataagcatccaatgacttctaattcatctgaaatagtcgttgctccaggcttctattccttctacagtgatgtgtcttcaaa 26279988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 9346814 - 9346889
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    |||| |||| ||||||||||||||||||||||||  | |||||||| |||||||| || |||| ||| ||||||||||    
T  9346814 tctttagtggataagcatccaatgccttctaatt--tttgaaatagtcgttgctccaggcttccatttcttctgcaat 9346889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 1090563 - 1090483
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg-ctctagccttctattccttctgcaatca 182  Q
    |||| |||| ||||||||||||||||||| ||||  |||||| ||||||||| |||  | |||| ||||||||||||||||    
T  1090563 tctttagtggataagcatccaatgccttcaaatttatctgaattagccgttgcctccgggcttccattccttctgcaatca 1090483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 20909478 - 20909545
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||| |||| |||| || ||||||||||| | |||||||| || |||||||||||||| ||||    
T  20909478 ataagcatctaatgtcttccaaatcctctgaaatcgtcgttgctccaggcttctattccttctacaat 20909545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 20109951 - 20109897
Alignment:
Q  119 atccaatgccttctaattcctctgaaatagccgttgctctagccttctattcctt 173  Q
    ||||||||||||||||||||| | |||||| |||||||| |  ||||||||||||    
T  20109951 atccaatgccttctaattcctttaaaatagtcgttgctccatgcttctattcctt 20109897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 5392 - 5532
Alignment:
Q  57 gtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgct 156  Q
    |||||||| |||||||||||| ||||||||||| |||||| | ||| ||||| || ||||  ||||||||||||| |||||||||||| |||||||||||    
T  5392 gtggagtagtggttgtacaattgtactattgtcctttctccgagctccttcactggataaatatccaatgccttcaaattcctctgaattagccgttgct 5491  T
Q  157 ctagccttctattccttctgcaatcacgtgtcttcaaataa 197  Q
    | || |||||||||| ||||||| |  ||||||||||||||    
T  5492 ccaggcttctattccatctgcaaacttgtgtcttcaaataa 5532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 55 - 201
Target Start/End: Complemental strand, 19505585 - 19505441
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| ||||||||||| ||||  || ||| ||  ||||  ||||||| |||||||||||||||||||||||||||||||||    
T  19505585 tagtggagtagtggttgtacaattgtactattgtcctttca-tgagct-ctatagtgggtaagcattcaatgccttctaattcctctgaaatagccgttg 19505488  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttcaaataaccaa 201  Q
    ||| ||  ||||||||||||||||| |  ||||||||||||||||||    
T  19505487 ctcgaggattctattccttctgcaaacttgtgtcttcaaataaccaa 19505441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 200
Target Start/End: Original strand, 12541633 - 12541779
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||||| |||||||||||| |||||||| || |||||||  ||| |||||  | ||||  ||||||||||||||||||||||| |||||| |||    
T  12541633 aatagtggagtagtggttgtacaattgtactattatcctttctcttagctccttcaaaggataaaaatccaatgccttctaattcctctaaaatagtcgt 12541732  T
Q  153 tgctctagccttctattccttctgcaatcacgtgtcttcaaataacca 200  Q
    | ||| || |||||||| ||||||||| |  ||| |||||||||||||    
T  12541733 ttctccaggcttctatttcttctgcaaacttgtg-cttcaaataacca 12541779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 180
Target Start/End: Original strand, 18558025 - 18558151
Alignment:
Q  53 aatagtggag-tactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccg 151  Q
    |||||||||| || |||||||||||| ||||||| ||| |||  |||| || |||||||| |||| ||||||||||||||||||| |||||| |||| ||    
T  18558025 aatagtggagatattggttgtacaattgtactat-gtccttttcctgcact-cttcagtggataaacatccaatgccttctaatttctctgatatagtcg 18558122  T
Q  152 ttgctctagccttctattccttctgcaat 180  Q
    ||||||||| ||| |||||||||||||||    
T  18558123 ttgctctaggcttatattccttctgcaat 18558151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 180
Target Start/End: Complemental strand, 17916953 - 17916844
Alignment:
Q  69 ttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctat 168  Q
    ||||||||| ||||||| |||||||  ||| ||| ||| |||| |||||| |||||||||||||||||||||| |||||| |||||||| || |||| ||    
T  17916953 ttgtacaattgtactat-gtcattttcctgtgct-ctttagtggataagcttccaatgccttctaattcctctaaaatagtcgttgctccaggcttccat 17916856  T
Q  169 tccttctgcaat 180  Q
    ||||||||||||    
T  17916855 tccttctgcaat 17916844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 203
Target Start/End: Complemental strand, 1208709 - 1208623
Alignment:
Q  118 catccaatgccttctaattcctctgaaatagccgtt-gctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaat 203  Q
    |||||||||||||| |||||||||||||||| |||| || | || |||||||||||||| ||| |  ||||||||||||||||||||    
T  1208709 catccaatgccttcaaattcctctgaaatagtcgttggccccaggcttctattccttctacaaacttgtgtcttcaaataaccaaat 1208623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 12193921 - 12194045
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||  ||||| |||||||||  ||||||| ||||| || | ||||||||||||||||| ||||| ||||||||||  |||| || || ||||    
T  12193921 tggttgtacaactgtact-ttgtcattttcctgcgct-cttcaatggacaagcatccaatgccttccaattcttctgaaatagttgttgttccaggcttc 12194018  T
Q  166 tattccttctgcaatcacgtgtcttca 192  Q
    |||||| ||| |||| | |||||||||    
T  12194019 tattccctctacaatgatgtgtcttca 12194045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 12438349 - 12438473
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||  ||||| |||||||||  ||||||| ||||| || | ||||||||||||||||| ||||| ||||||||||  |||| || || ||||    
T  12438349 tggttgtacaactgtact-ttgtcattttcctgcgct-cttcaatggacaagcatccaatgccttccaattcttctgaaatagttgttgttccaggcttc 12438446  T
Q  166 tattccttctgcaatcacgtgtcttca 192  Q
    |||||| ||| |||| | |||||||||    
T  12438447 tattccctctacaatgatgtgtcttca 12438473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 18772685 - 18772729
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||||    
T  18772685 ataagcatccaatgccttcaaattcctctgatttagtcgttgctc 18772729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 204
Target Start/End: Complemental strand, 16105140 - 16104993
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| ||| |||||||||||   |||||| ||||| || ||||||||||||||||||||||||||| | |||||| ||||||    
T  16105140 agtggagtaatggttgtacaattgtaatattgtcattttcttgcgct-cttcaatggataagcatccaatgccttctaattcctataaaatagtcgttgc 16105042  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttcaaataaccaaata 204  Q
    || || ||| |||||||||||||| |  | |||||| ||||||||||||    
T  16105041 tccaggcttatattccttctgcaaacttgcgtcttccaataaccaaata 16104993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 54 - 201
Target Start/End: Complemental strand, 18361729 - 18361583
Alignment:
Q  54 atagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgtt 153  Q
    |||||||| || |||||||||||| ||||||||||| |||| |||||||| || |||| ||||||||| ||||||||||||||||||||||||||  |||    
T  18361729 atagtggaatagtggttgtacaattgtactattgtcctttc-ctgcgcttttt-agtggataagcatctaatgccttctaattcctctgaaatagttgtt 18361632  T
Q  154 gctctagccttctattccttctgcaatcacgtgtcttcaa-ataaccaa 201  Q
    |||  |  |||||||||||||| |||||| |||||||||| ||||||||    
T  18361631 gcttcaagcttctattccttctacaatcatgtgtcttcaagataaccaa 18361583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 18047980 - 18047846
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| | |||||||||| |||||||  || ||||| |||||| |||||| | |||||||| |||||||||||||||||||||||||| || ||||    
T  18047980 agtggagtagttgttgtacaattgtactatgttcttttct-tgcgct-cttcagaggataagcattcaatgccttctaattcctctgaaatatccattgc 18047883  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttca 192  Q
    ||||| ||| |||||||||| |||| | |||||||||    
T  18047882 tctaggcttttattccttctacaatgatgtgtcttca 18047846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 9064321 - 9064198
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| |||||||  || ||| |||||||| |||||||| |||||||| |||||||||||||||||||  |||||| |||||    
T  9064321 tagtggagtaatggttgtacaattgtactatgttctttt-tctgcgct-cttcagtggataagcattcaatgccttctaattcctcataaatagtcgttg 9064224  T
Q  155 ctctagccttctattccttctgcaat 180  Q
    ||| || |||| ||||||||| ||||    
T  9064223 ctccaggcttccattccttctacaat 9064198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 180
Target Start/End: Original strand, 5035387 - 5035509
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| ||||| |||||| ||||||| |||||||  || |||| |||||||| ||||||||||||||||||||||||  |||||||||| |||||     
T  5035387 agtggagtaatggttatacaattgtactat-gtcattttcctacgct-cttcagtggataagcatccaatgccttctaatttatctgaaataggcgttgt 5035484  T
Q  156 tctagccttctattccttctgcaat 180  Q
    || || ||| |||||||||||||||    
T  5035485 tccaggcttttattccttctgcaat 5035509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 173
Target Start/End: Original strand, 16472693 - 16472808
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||| ||| ||||||||||| ||||||||   | ||| |||| ||||||||||||||||||||||| ||| ||||| || ||||     
T  16472693 tagtggagtattggttgtataattgtactattgtcctttctctg---tcctttagtggataagcatccaatgccttctaatgcctttgaaaaagtcgtta 16472789  T
Q  155 ctctagccttctattcctt 173  Q
    ||| || ||||||||||||    
T  16472790 ctccagtcttctattcctt 16472808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 16307868 - 16307756
Alignment:
Q  61 agtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctag 160  Q
    |||| |||||||||||| ||||||| ||| |||  ||| ||| |||||||| ||||||||||||||||||||||||| ||| |||||| |||||||| ||    
T  16307868 agtagtggttgtacaattgtactat-gtccttttcctgtgct-cttcagtggataagcatccaatgccttctaattcatctaaaatagtcgttgctccag 16307771  T
Q  161 ccttctattccttct 175  Q
     |||| |||||||||    
T  16307770 gcttccattccttct 16307756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 173
Target Start/End: Complemental strand, 13172447 - 13172382
Alignment:
Q  108 agtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattcctt 173  Q
    |||| |||||||||||||||||||||||| ||||||||||| |||||||| || |||||| |||||    
T  13172447 agtggataagcatccaatgccttctaattactctgaaatagtcgttgctccaggcttctactcctt 13172382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 178
Target Start/End: Complemental strand, 11572342 - 11572278
Alignment:
Q  114 taagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgca 178  Q
    ||||||| |||||||||||||||||||||||||| | ||||||  || |||||||||||||||||    
T  11572342 taagcatacaatgccttctaattcctctgaaatatctgttgcttcagtcttctattccttctgca 11572278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 14114050 - 14114166
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| |||||||||||| ||| ||| ||| || | |||  |||  || ||| ||||||||| ||||||||||||||| ||||||||||   ||||||    
T  14114050 tggagtagtggttgtacaattgtattatagtccttcccctgtcctttctctgtggataagcatctaatgccttctaattcatctgaaatagtttttgctc 14114149  T
Q  158 tagccttctattccttc 174  Q
     || |||||||||||||    
T  14114150 cagtcttctattccttc 14114166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 14423700 - 14423816
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| |||||||||||| ||| ||| ||| || | |||  |||  || ||| ||||||||| ||||||||||||||| ||||||||||   ||||||    
T  14423700 tggagtagtggttgtacaattgtattatagtccttcccctgtcctttctctgtggataagcatctaatgccttctaattcatctgaaatagtttttgctc 14423799  T
Q  158 tagccttctattccttc 174  Q
     || |||||||||||||    
T  14423800 cagtcttctattccttc 14423816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 178
Target Start/End: Complemental strand, 15871240 - 15871121
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| |||||||||||| ||||||||||| || |  ||  |||| |  ||| ||||||||||||||||||||||||| || |||| |   |||||||    
T  15871240 tggagtagtggttgtacaattgtactattgtcctt-caatgtccttcctatgtggataagcatccaatgccttctaattcttcagaaaaatttgttgctc 15871142  T
Q  158 tagccttctattccttctgca 178  Q
     || |||||||||||||||||    
T  15871141 cagtcttctattccttctgca 15871121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 16412061 - 16412129
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc-tattccttctgcaat 180  Q
    ||||||||||||||||||  |||| ||||||||||| |||||||| || |||| |||||||||||||||    
T  16412061 ataagcatccaatgcctttcaatttctctgaaatagtcgttgctccaggcttcttattccttctgcaat 16412129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 157
Target Start/End: Complemental strand, 7488040 - 7487951
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    |||||||||| | |||||||| || ||| |||||||| |||||||| ||||||||||||||||||| || ||||||||| ||| | ||||||    
T  7488040 tggttgtacagttgtactattttccttt-tctgcgct-cttcagtggataagcatccaatgccttcaaaatcctctgaattagtcattgctc 7487951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 25807394 - 25807468
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgcct 129  Q
    |||||||||| |||||||||||| |||||||| || || |||||  ||||||||||| ||||  |||||||||||    
T  25807394 tagtggagtagtggttgtacaattgtactattatccttgctctgtccttcttcagtggataaatatccaatgcct 25807468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 2501157 - 2501095
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttct 175  Q
    ||||| || |||||||||||||||| || ||||||  |||||||| || ||||||||||||||    
T  2501157 ataagaattcaatgccttctaattcttcagaaatattcgttgctccagtcttctattccttct 2501095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 16412744 - 16412814
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaat 125  Q
    |||||||||  |||||||||||| ||||||||||| |||| |||   ||||||| || |||||||||||||    
T  16412744 tagtggagttgtggttgtacaattgtactattgtcctttcactgacattcttcaatggataagcatccaat 16412814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 196
Target Start/End: Original strand, 23125947 - 23126085
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| || ||||||||| ||||||||||| || | |||| |||  ||  || ||||||||| ||| ||||| ||||||||| ||||| |  || ||     
T  23125947 tggagtagtgattgtacaattgtactattgtccttccactgccctttctccatggataagcatctaataccttccaattcctctcaaataacaattactt 23126046  T
Q  158 tagccttctattccttctgcaatcacgtgtcttcaaata 196  Q
     || |||||||||||||||||  |  |||||||||||||    
T  23126047 cagtcttctattccttctgcacacgtgtgtcttcaaata 23126085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 11016034 - 11016098
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgca 178  Q
    |||||||| |||||||||||||||| || | |||| || |||||| || |||||||||||||||||    
T  11016034 ataagcattcaatgccttctaattcttc-ggaatatccattgctccagtcttctattccttctgca 11016098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 1878331 - 1878264
Alignment:
Q  110 tgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgca 178  Q
    |||||||||||| || |||||||||||| || | |||| |||||||||||| |||||||| ||| ||||    
T  1878331 tgtataagcatctaaagccttctaattcttcag-aatatccgttgctctagtcttctattacttatgca 1878264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 197
Target Start/End: Complemental strand, 3401 - 3262
Alignment:
Q  58 tggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctc 157  Q
    ||||||| ||||||||||||  ||||||| || |||||||  ||| |||| ||| ||||||||||||||||||| |||||||||||||||| | ||||||    
T  3401 tggagtagtggttgtacaattttactattatcctttctcttagctccttctgtggataagcatccaatgccttcaaattcctctgaaatagtcattgctc 3302  T
Q  158 tagccttctattccttctgcaatcacgtgtcttcaaataa 197  Q
     || ||| |||||||||||||| |  |||||||| |||||    
T  3301 cagacttttattccttctgcaaacttgtgtcttcgaataa 3262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 182
Target Start/End: Original strand, 20082 - 20207
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||| | |||||||||||| ||||||| ||| |||  ||||||| ||||| || ||||||||||||||| ||||||||| |||||||||| |||||    
T  20082 tagtggagaagtggttgtacaattgtactat-gtccttttcctgcgct-cttcaatggataagcatccaatgctttctaattcttctgaaatagtcgttg 20179  T
Q  155 ctctagccttctattccttctgcaatca 182  Q
    |||||| |||| ||||||||||||||||    
T  20180 ctctaggcttccattccttctgcaatca 20207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 3501 - 3381
Alignment:
Q  53 aatagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgt 152  Q
    |||||||||||| |||||||||||| |||||||  || |||| |||  |  ||| |||| ||||||||| |||||||||||||||||||||||||||| |    
T  3501 aatagtggagtagtggttgtacaattgtactatgttcttttc-ctgttcc-ctttagtggataagcatcgaatgccttctaattcctctgaaatagccat 3404  T
Q  153 tgctctagccttctattccttct 175  Q
    |||||||| ||||||||||||||    
T  3403 tgctctaggcttctattccttct 3381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 180
Target Start/End: Original strand, 2728 - 2797
Alignment:
Q  111 gtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||| ||||||||||||| ||||||||| |||||| |||||||| || ||| ||||| |||||||||    
T  2728 gtataagtatccaatgccttccaattcctctaaaatagtcgttgctccaggcttttattctttctgcaat 2797  T

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Target: scaffold0074 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 31639 - 31771
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||||||| |||||||   | ||||  |||||| |||||||| ||||||||||||| ||||||||||||| | |||||| ||||||    
T  31639 agtggagtagtggttgtacaattgtactatatccttttca-tgcgct-cttcagtggataagcatccaattccttctaattcctttaaaatagtcgttgc 31736  T
Q  156 tctagccttctattccttctgcaatcacgtgtctt 190  Q
    || || ||||||||||||||||||| | |||||||    
T  31737 tccaggcttctattccttctgcaatgatgtgtctt 31771  T

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Target: scaffold0092 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 198
Target Start/End: Original strand, 8097 - 8237
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| ||||||||||||  ||||||| || ||||| ||  ||||| ||||| |||| ||||||||||||||||||||||||||||||  |||||    
T  8097 tagtggagtagtggttgtacaattatactattatcctttctatgaccttctccagtggataatcatccaatgccttctaattcctctgaaataatcgttg 8196  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttcaaataac 198  Q
    ||  ||    ||||||||||||||| |  |||||||||||||||    
T  8197 cttcag---actattccttctgcaaacttgtgtcttcaaataac 8237  T

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Target: scaffold0040 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 4118 - 3983
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||||| |||||||||||| ||||||| ||| ||| |||||||| |||||  | |||| |||| ||| ||||||||||||| |||||||||||||     
T  4118 tagtggagtagtggttgtacaattgtactat-gtcctttttctgcgct-cttcaaaggataaacatcaaattccttctaattcctatgaaatagccgttc 4021  T
Q  155 ctctagccttctattccttctgcaatcacgtgtcttca 192  Q
    ||| |  ||||||||||||||||||||  |||||||||    
T  4020 ctccaaacttctattccttctgcaatcttgtgtcttca 3983  T

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Target: scaffold0351 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 192
Target Start/End: Complemental strand, 9348 - 9217
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||| ||| ||||||| ||| |||  ||||||| |||||||| |   |||||||||||||||||||||||| |||||| |||||||    
T  9348 agtggagtagtggttgtaaaattgtactat-gtccttttcctgcgct-cttcagtgga---gcatccaatgccttctaattcctcagaaatatccgttgc 9254  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttca 192  Q
    | ||| ||| ||||||||||||||||  |||||||||    
T  9253 tttaggcttttattccttctgcaatcttgtgtcttca 9217  T

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Target: scaffold0002 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 192
Target Start/End: Original strand, 112222 - 112353
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| |||||||| ||| ||||||| ||| |||  ||||||| |||||||| |   |||||||||||||||||||||||| |||||| |||||||    
T  112222 agtggagtagtggttgtaaaattgtactat-gtccttttcctgcgct-cttcagtgga---gcatccaatgccttctaattcctcagaaatatccgttgc 112316  T
Q  156 tctagccttctattccttctgcaatcacgtgtcttca 192  Q
    | ||| ||| ||||||||||||||||  |||||||||    
T  112317 tttaggcttttattccttctgcaatcttgtgtcttca 112353  T

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Target: scaffold1107 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 174
Target Start/End: Complemental strand, 2444 - 2339
Alignment:
Q  69 ttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctat 168  Q
    ||||| ||| ||||||||||| ||||||||   ||||||||||  |||||||||||||||||||||||||||| |||||| |||||||  || ||| |||    
T  2444 ttgtataattgtactattgtcctttctctgtcattcttcagtgggtaagcatccaatgccttctaattcctctaaaatagtcgttgcttcagtcttatat 2345  T
Q  169 tccttc 174  Q
    ||||||    
T  2344 tccttc 2339  T

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Target: scaffold0522 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 4363 - 4238
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||| | |||||||||||| |||| ||  || |||| ||||||| ||||| || ||||||||||||||| ||||||||| |||||||||| |||||    
T  4363 tagtggagaagtggttgtacaattgtacaatgttcttttc-ctgcgct-cttcaatggataagcatccaatgctttctaattcttctgaaatagtcgttg 4266  T
Q  155 ctctagccttctattccttctgcaatca 182  Q
     ||||| |||| ||||||||| ||||||    
T  4265 ttctaggcttccattccttctacaatca 4238  T

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Target: scaffold0522; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 11646 - 11521
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttg 154  Q
    |||||||| | |||||||||||| |||| ||  || |||| ||||||| ||||| || ||||||||||||||| ||||||||| |||||||||| |||||    
T  11646 tagtggagaagtggttgtacaattgtacaatgttcttttc-ctgcgct-cttcaatggataagcatccaatgctttctaattcttctgaaatagtcgttg 11549  T
Q  155 ctctagccttctattccttctgcaatca 182  Q
     ||||| |||| ||||||||| ||||||    
T  11548 ttctaggcttccattccttctacaatca 11521  T

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Target: scaffold0683 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 204
Target Start/End: Original strand, 436 - 537
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatcacgtgtcttcaaataaccaaa 202  Q
    |||| |||| ||||| || ||||||||||||||||||||||||| | ||||||||||| ||| |||||||||| ||| |   |||||| |||||||||||    
T  436 tctttagtgaataagtattcaatgccttctaattcctctgaaattgtcgttgctctaggcttttattccttctccaaacttatgtcttaaaataaccaaa 535  T
Q  203 ta 204  Q
    ||    
T  536 ta 537  T

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Target: scaffold0490 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 7384 - 7463
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    |||||| || ||||||||||||||| ||||||||| |||||||||| || || ||||| |||| ||||||||||||||||    
T  7384 tcttcaatggataagcatccaatgctttctaattcttctgaaatagtcgctgttctaggcttccattccttctgcaatca 7463  T

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Target: scaffold0011 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 59618 - 59697
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaatca 182  Q
    |||||| || |||| |||||||||||||||||||||||| |||||| |||||||| || |||| ||||||||| ||||||    
T  59618 tcttcattggataaccatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttctacaatca 59697  T

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Target: scaffold0364 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 10491 - 10379
Alignment:
Q  66 tggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc 165  Q
    |||||||||||| |||||||   | |||| |||||||| ||||||| |||| ||||||||||||||||||| ||||||||||| ||||||||| | |||     
T  10491 tggttgtacaattgtactatatccttttc-ctgcgctt-ttcagtggataaacatccaatgccttctaatttctctgaaatagtcgttgctctcggcttg 10394  T
Q  166 tattccttctgcaat 180  Q
     |||||||| |||||    
T  10393 cattccttccgcaat 10379  T

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Target: scaffold0067 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 16494 - 16400
Alignment:
Q  79 gtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattcctt 173  Q
    ||||||||||| ||||| ||   ||||||||||  ||||||||||||||||||||||| |||| |||||| |||||||  || ||||||||||||    
T  16494 gtactattgtcctttctttgtcattcttcagtgggtaagcatccaatgccttctaatttctctaaaatagtcgttgcttcagtcttctattcctt 16400  T

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Target: scaffold0772 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 103 - 180
Target Start/End: Complemental strand, 930 - 853
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||| |||||||||||||| ||||||| |||||||||||||  ||||||| |  |||| ||||||| ||||||    
T  930 tcttcagtggataagcatccaatgtcttctaaatcctctgaaatagttgttgctccaagcttccattccttatgcaat 853  T

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Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 773 - 841
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttc-tattccttctgcaat 180  Q
    ||||||||||||||||||  |||| ||||||||||| |||||||| || |||| |||||||||||||||    
T  773 ataagcatccaatgcctttcaatttctctgaaatagtcgttgctccaggcttcttattccttctgcaat 841  T

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Target: scaffold0003; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 175
Target Start/End: Complemental strand, 416083 - 416028
Alignment:
Q  120 tccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttct 175  Q
    |||||||||||||||||| | |||||||| |||||||| || ||||||||||||||    
T  416083 tccaatgccttctaattcatttgaaatagtcgttgctccaggcttctattccttct 416028  T

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Target: scaffold0003; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 1456 - 1526
Alignment:
Q  55 tagtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaat 125  Q
    |||||||||  |||||||||||| ||||||||||| |||| |||   ||||||| || |||||||||||||    
T  1456 tagtggagttgtggttgtacaattgtactattgtcctttcactgacattcttcaatggataagcatccaat 1526  T

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Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 29867 - 29933
Alignment:
Q  113 ataagcatccaatgccttctaattcctctgaaatagccgttgctctagccttctattccttctgcaat 180  Q
    ||||||||||||||||||| ||||| |||||| ||| |||||||| || |||||||| ||||||||||    
T  29867 ataagcatccaatgccttccaattcatctgaattagtcgttgctccaggcttctatt-cttctgcaat 29933  T

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Target: scaffold0043 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 178
Target Start/End: Complemental strand, 1934 - 1813
Alignment:
Q  56 agtggagtactggttgtacaatcgtactattgtcatttctctgcgcttcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgc 155  Q
    ||||||||| ||||| |||||  |||||| |||| |||   |||||| ||| |||| ||||| ||| ||||||||||| |||||||||||||| | || |    
T  1934 agtggagtagtggttatacaaatgtactagtgtccttttcatgcgct-ctttagtggataagtatctaatgccttctatttcctctgaaatagtcatttc 1836  T
Q  156 tctagccttctattccttctgca 178  Q
    | ||| ||| |||||||||||||    
T  1835 tttaggcttttattccttctgca 1813  T

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Target: scaffold1026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 3027 - 3080
Alignment:
Q  103 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagccgttgct 156  Q
    |||| |||| ||||||||||||||| ||||||||||||| ||| || |||||||    
T  3027 tctttagtggataagcatccaatgcattctaattcctctaaaacagtcgttgct 3080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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