View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_27 (Length: 247)

Name: NF18159_low_27
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_27
NF18159_low_27
[»] chr4 (2 HSPs)
chr4 (1-241)||(4228473-4228715)
chr4 (183-241)||(47597429-47597487)
[»] chr6 (1 HSPs)
chr6 (183-239)||(1222819-1222875)
[»] chr3 (4 HSPs)
chr3 (183-239)||(54812087-54812143)
chr3 (183-239)||(46428860-46428916)
chr3 (183-232)||(42794797-42794846)
chr3 (191-241)||(43912099-43912149)
[»] chr1 (2 HSPs)
chr1 (183-239)||(22065040-22065096)
chr1 (195-247)||(11531531-11531583)
[»] chr7 (2 HSPs)
chr7 (183-239)||(24468804-24468860)
chr7 (183-239)||(24473752-24473808)
[»] chr5 (3 HSPs)
chr5 (183-239)||(18934357-18934413)
chr5 (183-232)||(4560155-4560204)
chr5 (191-229)||(18883718-18883756)
[»] chr8 (2 HSPs)
chr8 (183-234)||(44146013-44146064)
chr8 (191-238)||(38560465-38560512)
[»] chr2 (2 HSPs)
chr2 (183-234)||(17290338-17290389)
chr2 (183-229)||(9004749-9004795)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 4228715 - 4228473
Alignment:
Q  1 tatcatagtggtagaaacaaagaaagtgtaaggataagagtttctaggatagataattaaagtcacttttaaatgatttttccgttaaaaaacattacaa 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228715 tatcatagtggtagaagcaaagaaagtgtaaggataagagtttctaggatagataattaaagtcacttttaaatgatttttccgttaaaaaacattacaa 4228616  T
Q  101 ttttgattaaattttgtaaactacttatcaagagctaatttaactgattctaatgaataatggaagctaca--nnnnnnnnnnnggtacaatagagggca 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||    
T  4228615 ttttgattaaattttgtaaactacttatcaagagctaatttaactgattctaatgaataatggaagctacaatttttttttttgggtacaatagagggca 4228516  T
Q  199 aagcccaaaagaaaagaaactacgaaattaaccggatattctt 241  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  4228515 aagctcaaaagaaaagaaactacgaaattaaccggatattctt 4228473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 183 - 241
Target Start/End: Original strand, 47597429 - 47597487
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattctt 241  Q
    ||||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||    
T  47597429 ggtacaaaagagggcaaagtccaagagaaaagaaactacgaaattaaccggacattctt 47597487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 1222819 - 1222875
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  1222819 ggtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 1222875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 54812087 - 54812143
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  54812087 ggtacaatagagggcaaagcccaaaagaaaagaaactgcgaaattaaccggacattc 54812143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 46428916 - 46428860
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||| |||| ||||    
T  46428916 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaacggacattc 46428860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 42794846 - 42794797
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccg 232  Q
    ||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  42794846 ggtacaaaagagggcaaagcccaggagaaaagaaactacgaaattaaccg 42794797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 43912099 - 43912149
Alignment:
Q  191 agagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattctt 241  Q
    |||||||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  43912099 agagggcaaaacccaagagaaaagaaactacgaaattaactggacattctt 43912149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 22065040 - 22065096
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  22065040 ggtacaatagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 22065096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 11531583 - 11531531
Alignment:
Q  195 ggcaaagcccaaaagaaaagaaactacgaaattaaccggatattcttcgacat 247  Q
    |||||||| ||| | |||||||||||||||||||| |||| |||||| |||||    
T  11531583 ggcaaagctcaagacaaaagaaactacgaaattaatcggacattcttagacat 11531531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 24468860 - 24468804
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24468860 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 24468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 24473808 - 24473752
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||    
T  24473808 ggtacaaaagagggcaaagcccaagagaaaagaaactacgaaattaaccggacattc 24473752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 183 - 239
Target Start/End: Complemental strand, 18934413 - 18934357
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccggatattc 239  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||    
T  18934413 ggtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccggacattc 18934357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 232
Target Start/End: Original strand, 4560155 - 4560204
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccg 232  Q
    ||||||| |||||||||| ||||| |||||||||||||||||||||||||    
T  4560155 ggtacaaaagagggcaaatcccaagagaaaagaaactacgaaattaaccg 4560204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 18883756 - 18883718
Alignment:
Q  191 agagggcaaagcccaaaagaaaagaaactacgaaattaa 229  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  18883756 agagggcaaagtccaagagaaaagaaactacgaaattaa 18883718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 44146064 - 44146013
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgga 234  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  44146064 ggtacaatagagggcaaagcccaagagaaaagaaattacgaaattaaccgga 44146013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 38560465 - 38560512
Alignment:
Q  191 agagggcaaagcccaaaagaaaagaaactacgaaattaaccggatatt 238  Q
    ||||||||||   ||| |||||||||||||||||||||||||||||||    
T  38560465 agagggcaaaattcaagagaaaagaaactacgaaattaaccggatatt 38560512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 183 - 234
Target Start/End: Complemental strand, 17290389 - 17290338
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaaccgga 234  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  17290389 ggtacaatagagggcaaagtccaagagaaaagaaactacgaaattaaccgga 17290338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 9004795 - 9004749
Alignment:
Q  183 ggtacaatagagggcaaagcccaaaagaaaagaaactacgaaattaa 229  Q
    ||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  9004795 ggtacaatagagggcaaagtccaagagaaaagaaactatgaaattaa 9004749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University