View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_3 (Length: 637)

Name: NF18159_low_3
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_3
NF18159_low_3
[»] chr5 (11 HSPs)
chr5 (1-251)||(28785203-28785453)
chr5 (319-576)||(28784878-28785135)
chr5 (565-623)||(28784799-28784857)
chr5 (564-621)||(20202640-20202697)
chr5 (565-621)||(25898634-25898690)
chr5 (542-576)||(1173044-1173078)
chr5 (481-519)||(8688100-8688138)
chr5 (482-520)||(20887938-20887976)
chr5 (554-583)||(6702483-6702512)
chr5 (564-621)||(16100879-16100936)
chr5 (565-621)||(6427283-6427339)
[»] scaffold0223 (1 HSPs)
scaffold0223 (475-621)||(16114-16261)
[»] chr1 (19 HSPs)
chr1 (564-621)||(18844009-18844066)
chr1 (485-581)||(10308361-10308457)
chr1 (566-623)||(49597193-49597250)
chr1 (565-621)||(11012135-11012191)
chr1 (483-576)||(39222588-39222681)
chr1 (484-576)||(12926714-12926806)
chr1 (485-521)||(46923665-46923701)
chr1 (485-521)||(48569438-48569474)
chr1 (546-576)||(47983638-47983668)
chr1 (564-621)||(3660208-3660265)
chr1 (484-521)||(3872136-3872173)
chr1 (485-518)||(18169182-18169215)
chr1 (564-621)||(21482904-21482961)
chr1 (514-575)||(37708020-37708081)
chr1 (568-621)||(41871735-41871788)
chr1 (485-521)||(11435360-11435396)
chr1 (485-521)||(23943681-23943717)
chr1 (485-521)||(30308266-30308302)
chr1 (565-621)||(48566757-48566813)
[»] chr8 (13 HSPs)
chr8 (483-520)||(9512530-9512567)
chr8 (485-521)||(15743352-15743388)
chr8 (564-623)||(23542772-23542831)
chr8 (485-576)||(23542851-23542942)
chr8 (479-521)||(4412591-4412633)
chr8 (537-583)||(32074931-32074977)
chr8 (485-522)||(7130730-7130767)
chr8 (540-581)||(36701317-36701358)
chr8 (484-520)||(3194654-3194690)
chr8 (482-522)||(5076335-5076375)
chr8 (565-621)||(34471624-34471679)
chr8 (485-521)||(35161495-35161531)
chr8 (485-521)||(43693728-43693764)
[»] chr7 (12 HSPs)
chr7 (564-621)||(37524188-37524245)
chr7 (539-581)||(29714241-29714283)
chr7 (485-522)||(39476416-39476453)
chr7 (564-621)||(41219406-41219463)
chr7 (485-521)||(4035315-4035351)
chr7 (480-520)||(23943804-23943844)
chr7 (483-519)||(47441552-47441588)
chr7 (488-521)||(21153696-21153729)
chr7 (564-621)||(27874056-27874113)
chr7 (564-621)||(29714297-29714354)
chr7 (564-621)||(34354420-34354477)
chr7 (514-581)||(33802891-33802958)
[»] chr4 (19 HSPs)
chr4 (564-621)||(2777973-2778030)
chr4 (568-621)||(31936354-31936407)
chr4 (485-576)||(21713273-21713364)
chr4 (474-521)||(26973978-26974025)
chr4 (485-521)||(31825892-31825928)
chr4 (565-621)||(49065582-49065638)
chr4 (485-521)||(54703525-54703561)
chr4 (483-521)||(4674935-4674973)
chr4 (546-576)||(9958203-9958233)
chr4 (564-621)||(27761161-27761218)
chr4 (484-521)||(36047055-36047092)
chr4 (484-521)||(39834815-39834852)
chr4 (572-621)||(42039021-42039070)
chr4 (546-583)||(42118923-42118960)
chr4 (485-522)||(52032845-52032882)
chr4 (540-576)||(9958211-9958247)
chr4 (540-576)||(21058717-21058753)
chr4 (529-581)||(37694615-37694667)
chr4 (485-521)||(40361791-40361827)
[»] chr3 (8 HSPs)
chr3 (564-621)||(39415344-39415401)
chr3 (568-623)||(25574829-25574884)
chr3 (568-621)||(6755746-6755799)
chr3 (564-621)||(48086841-48086898)
chr3 (500-583)||(55480345-55480427)
chr3 (542-576)||(2182597-2182631)
chr3 (485-521)||(37280603-37280639)
chr3 (485-521)||(39417957-39417993)
[»] chr2 (9 HSPs)
chr2 (485-581)||(41192486-41192582)
chr2 (485-564)||(34620002-34620081)
chr2 (564-621)||(29908501-29908558)
chr2 (481-521)||(42242115-42242155)
chr2 (567-621)||(29132666-29132720)
chr2 (481-518)||(32733930-32733967)
chr2 (550-578)||(18206910-18206938)
chr2 (485-521)||(42882455-42882491)
chr2 (485-521)||(43837507-43837543)
[»] chr6 (7 HSPs)
chr6 (485-519)||(5741178-5741212)
chr6 (568-621)||(319227-319280)
chr6 (564-621)||(13312585-13312642)
chr6 (485-521)||(5741566-5741602)
chr6 (485-521)||(9521487-9521523)
chr6 (546-576)||(13312535-13312565)
chr6 (485-521)||(11598907-11598943)
[»] scaffold0861 (1 HSPs)
scaffold0861 (569-621)||(3756-3808)
[»] scaffold0010 (1 HSPs)
scaffold0010 (546-575)||(34769-34798)
[»] scaffold1212 (1 HSPs)
scaffold1212 (540-576)||(1802-1838)
[»] scaffold0007 (2 HSPs)
scaffold0007 (544-576)||(232447-232479)
scaffold0007 (484-516)||(256390-256422)


Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 28785453 - 28785203
Alignment:
Q  1 ggataagacttggattgttttcttaacaattgtgaataatttattcaagattcaataaaaattaggcataaacttttgcagcttattttaccgattgatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28785453 ggataagacttggattgttttcttaacaattgtgaataatttattcaagattcaataaaaattaggcataaacttttgcagcttattttaccgattgatc 28785354  T
Q  101 aagtatcctcaaaatcttatcttagacaacatttatctgtagtaataaaaagagtgtaatggttatgcacagccatcattcaataaatacactatcgata 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28785353 aagtatcctcaaaatcttatcttacacaacatttatctgtagtaataaaaagagtgtaatggttatgcacagccatcattcaataaatacactatcgata 28785254  T
Q  201 catatcatgttttatcacttcttcacactctatgtaaatttagatactatg 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28785253 catatcatgttttatcacttcttcacactctatgtaaatttagatactatg 28785203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 319 - 576
Target Start/End: Complemental strand, 28785135 - 28784878
Alignment:
Q  319 ttatgaaaaagaataacatttttattccctctaaattttttagttaaagtttttagtctgtgttgttaaatgagtttaacgaagggtgatgtatcaacaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  28785135 ttatgaaaaagaataacatttttattccctctaaattttttagttaaagttttcggtctgtgttgttaaatgagtttaacggagggtgatgtatcaacaa 28785036  T
Q  419 tagggccggcctaagcataaggttgcccaagccttgcgttaggccccnnnnnnntaattttattttgaattctgctcttcaccctgcactttttgctcgc 518  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||| ||||||||||||||||||    
T  28785035 tagggccggcctaagcataaggttgcccaagccttgtgttaggccccaaaaaaataattttattttgaattctgctcttcatcctgcactttttgctcgc 28784936  T
Q  519 gcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||| ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  28784935 gcccagctgattttcccaacatacccttgtgttaattaagttacgctgcgtgacttaa 28784878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 565 - 623
Target Start/End: Complemental strand, 28784857 - 28784799
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 623  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  28784857 tgcgtgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttggtc 28784799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 20202697 - 20202640
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||| |||| |||||    
T  20202697 ctgcgtgacttgagtcacacaccactggcctgggcgcgagttaactcgcgcaggttgg 20202640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 25898634 - 25898690
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||| |||||||| || ||||||| || |||| |||||||||||||||||||||    
T  25898634 tgcgtgatttaagtcatacaccactggcctaggcgtgagttaactcacgcacgttgg 25898690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 1173078 - 1173044
Alignment:
Q  542 cccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||||||||||||||||||| |||||||||||    
T  1173078 cccttgcgttagttaagtcacgcagcgtgacttaa 1173044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 519
Target Start/End: Original strand, 8688100 - 8688138
Alignment:
Q  481 ttttgaattctgctcttcaccctgcactttttgctcgcg 519  Q
    |||||||||||||||||||||||| || |||||||||||    
T  8688100 ttttgaattctgctcttcaccctgtacattttgctcgcg 8688138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 520
Target Start/End: Complemental strand, 20887976 - 20887938
Alignment:
Q  482 tttgaattctgctcttcaccctgcactttttgctcgcgc 520  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  20887976 tttgaattctgctctccaccctgcacattttgctcgcgc 20887938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 554 - 583
Target Start/End: Complemental strand, 6702512 - 6702483
Alignment:
Q  554 ttaagtcacgctgcgtgacttaagtcacac 583  Q
    ||||||||||||||||||||||||||||||    
T  6702512 ttaagtcacgctgcgtgacttaagtcacac 6702483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 16100879 - 16100936
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||| | | ||| ||||||||||||||||||| |||||    
T  16100879 ctgcgtgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaagttgg 16100936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 6427283 - 6427339
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||||| | | ||||| ||  |||||||||||||||||||| ||||    
T  6427283 tgcgtgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcaccttgg 6427339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 475 - 621
Target Start/End: Complemental strand, 16261 - 16114
Alignment:
Q  475 attttattttgaattctgctcttcaccctgcac-tttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgact 573  Q
    ||||| |||||||||||||||||   ||  ||| |||||||||||||| ||||||||| || |  |||||| ||||| |||||||||||||| |||||||    
T  16261 attttcttttgaattctgctcttttaccaacacatttttgctcgcgcccagctgatttgccaattatacccctgcgtgagttaagtcacgctacgtgact 16162  T
Q  574 taagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||| | ||| ||| ||| ||||| ||||||||||||| |||||    
T  16161 taagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttgg 16114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 18844066 - 18844009
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||    
T  18844066 ctgcgtgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttgg 18844009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 485 - 581
Target Start/End: Original strand, 10308361 - 10308457
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 581  Q
    ||||||||||||||||||||||| |||||||||||||  ||  ||||||  || ||| || ||||| ||||||||||||| ||| ||||||| ||||    
T  10308361 gaattctgctcttcaccctgcacattttgctcgcgccctgcacattttctaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcac 10308457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 566 - 623
Target Start/End: Original strand, 49597193 - 49597250
Alignment:
Q  566 gcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 623  Q
    |||||||||||||||| | ||||||| ||  |||||||||||||||||||||||||||    
T  49597193 gcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtc 49597250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 11012135 - 11012191
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  11012135 tgcgtgagttaagtcgcacaccactggcctgggcgtgagttaactcacgcacgttgg 11012191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 576
Target Start/End: Original strand, 39222588 - 39222681
Alignment:
Q  483 ttgaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||| ||||||||||||||||| |||||||||||||  || |   | || || ||  ||||||| |||||||||||||| |||||||||||    
T  39222588 ttgaattttgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgtccttgcgctagttaagtcacgcagcgtgacttaa 39222681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 484 - 576
Target Start/End: Original strand, 12926714 - 12926806
Alignment:
Q  484 tgaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    |||||| ||||||||||||||||| |||||||| ||||  ||   |||||| || ||| || ||||| ||||||||||||| ||| |||||||    
T  12926714 tgaattttgctcttcaccctgcacattttgctcccgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaa 12926806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 46923665 - 46923701
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| |||||||||||||    
T  46923665 gaattctgctcttcaccctgcacattttgctcgcgcc 46923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 48569474 - 48569438
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| |||||||||||||    
T  48569474 gaattctgctcttcaccctgcacattttgctcgcgcc 48569438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 576
Target Start/End: Complemental strand, 47983668 - 47983638
Alignment:
Q  546 tgcgttagttaagtcacgctgcgtgacttaa 576  Q
    |||||||||||||||||||||||||||||||    
T  47983668 tgcgttagttaagtcacgctgcgtgacttaa 47983638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 3660265 - 3660208
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||| ||| ||  |||||||||||||||||||| ||||    
T  3660265 ctgcgtgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttgg 3660208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Original strand, 3872136 - 3872173
Alignment:
Q  484 tgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  3872136 tgaattctgctcttccccctgcacttttcgctcgcgcc 3872173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 18169182 - 18169215
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgc 518  Q
    ||||||||||||||||||||||| ||||||||||    
T  18169182 gaattctgctcttcaccctgcacattttgctcgc 18169215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 21482904 - 21482961
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||||| | ||  || ||||||||||||||||||||||    
T  21482904 ctgcgtgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttgg 21482961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 575
Target Start/End: Original strand, 37708020 - 37708081
Alignment:
Q  514 ctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgactta 575  Q
    |||||||| | ||||||||   || ||||| |||||| ||||||||||||||||||||||||    
T  37708020 ctcgcgcccaactgattttttaaatatacctttgcgtgagttaagtcacgctgcgtgactta 37708081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 41871735 - 41871788
Alignment:
Q  568 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||| || | ||||||| ||  |||||||||||||||||||||||||    
T  41871735 gtgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgttgg 41871788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 11435396 - 11435360
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||||||||||||||||||||||||||  ||||||||    
T  11435396 gaattctgctcttcaccctgcacttttcactcgcgcc 11435360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 23943717 - 23943681
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  23943717 gaattctgctcttcaccctgcacattttgcttgcgcc 23943681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 30308266 - 30308302
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||||| |||||||||||||||| |||||||||||||    
T  30308266 gaattcagctcttcaccctgcacattttgctcgcgcc 30308302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 48566757 - 48566813
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||||| |   ||||| ||  |||||||||||||||||||||||||    
T  48566757 tgcgtgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttgg 48566813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 520
Target Start/End: Complemental strand, 9512567 - 9512530
Alignment:
Q  483 ttgaattctgctcttcaccctgcactttttgctcgcgc 520  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9512567 ttgaattctgctcttcaccctgcactttttgctcgcgc 9512530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 15743388 - 15743352
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| |||||||||||||    
T  15743388 gaattctgctcttcaccctgcacattttgctcgcgcc 15743352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 623
Target Start/End: Complemental strand, 23542831 - 23542772
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 623  Q
    ||||||||||||| |||| | ||||||| ||  ||||||||||||||| |||||||||||    
T  23542831 ctgcgtgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtc 23542772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 576
Target Start/End: Complemental strand, 23542942 - 23542851
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||| |||||||||||| |||| ||| |||||||||  || |   |||| || ||||||| ||||||| |||||||| |||||||||||||    
T  23542942 gaattttgctcttcacccagcacatttcgctcgcgccctgcagccattcctaatataccctcgcgttaggtaagtcacactgcgtgacttaa 23542851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 479 - 521
Target Start/End: Original strand, 4412591 - 4412633
Alignment:
Q  479 tattttgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||| |||| |||| |||||||||||||    
T  4412591 tattttgaattctgctctttacccagcacattttgctcgcgcc 4412633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 537 - 583
Target Start/End: Original strand, 32074931 - 32074977
Alignment:
Q  537 acatacccttgcgttagttaagtcacgctgcgtgacttaagtcacac 583  Q
    |||||||| ||||||| |||| ||||||||||||| |||||||||||    
T  32074931 acatacccatgcgttacttaactcacgctgcgtgagttaagtcacac 32074977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 7130767 - 7130730
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcct 522  Q
    |||| |||||||||||||||||||||| ||||||||||    
T  7130767 gaatcctgctcttcaccctgcacttttcgctcgcgcct 7130730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 581
Target Start/End: Original strand, 36701317 - 36701358
Alignment:
Q  540 tacccttgcgttagttaagtcacgctgcgtgacttaagtcac 581  Q
    ||||| ||||||||||||||||||| ||| ||||||||||||    
T  36701317 tacccatgcgttagttaagtcacgcagcgcgacttaagtcac 36701358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 520
Target Start/End: Complemental strand, 3194690 - 3194654
Alignment:
Q  484 tgaattctgctcttcaccctgcactttttgctcgcgc 520  Q
    ||||||||||||||  |||||||||||||||||||||    
T  3194690 tgaattctgctctttcccctgcactttttgctcgcgc 3194654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 5076375 - 5076335
Alignment:
Q  482 tttgaattctgctcttcaccctgcactttttgctcgcgcct 522  Q
    ||||||||||||||| |||||||||| | ||||||||||||    
T  5076375 tttgaattctgctctccaccctgcacatgttgctcgcgcct 5076335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 34471679 - 34471624
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||||| | ||| ||| ||  |||||||||||||||||||||||||    
T  34471679 tgcgtgacttaagtcacgcaccattgg-ctatgcgcgagttaactcacgcacgttgg 34471624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 35161495 - 35161531
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  35161495 gaattctactcttcaccctgcacattttgctcgcgcc 35161531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 43693764 - 43693728
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  43693764 gaattttgctcttcaccctgcacattttgctcgcgcc 43693728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 37524245 - 37524188
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||    
T  37524245 ctgcgtgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttgg 37524188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 539 - 581
Target Start/End: Original strand, 29714241 - 29714283
Alignment:
Q  539 atacccttgcgttagttaagtcacgctgcgtgacttaagtcac 581  Q
    |||||| ||||||||||||||||||||||||||||||| ||||    
T  29714241 atacccatgcgttagttaagtcacgctgcgtgacttaaatcac 29714283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 39476416 - 39476453
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcct 522  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  39476416 gaattctgctcttcaccctgcacattttgctcgcgcct 39476453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 41219463 - 41219406
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| |  |||||| ||  |||||||||||||||||||||||||    
T  41219463 ctgcgtgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttgg 41219406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 4035351 - 4035315
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| |||||||||||||    
T  4035351 gaattctgctcttcaccctgcacattttgctcgcgcc 4035315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 480 - 520
Target Start/End: Complemental strand, 23943844 - 23943804
Alignment:
Q  480 attttgaattctgctcttcaccctgcactttttgctcgcgc 520  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  23943844 atttggaattctgctcttcaccctgcacattttgctcgcgc 23943804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 47441552 - 47441588
Alignment:
Q  483 ttgaattctgctcttcaccctgcactttttgctcgcg 519  Q
    ||||||| |||||||||||||||||||||||||||||    
T  47441552 ttgaattatgctcttcaccctgcactttttgctcgcg 47441588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 521
Target Start/End: Original strand, 21153696 - 21153729
Alignment:
Q  488 ttctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||| ||||||||||||||||||||||    
T  21153696 ttctgctcttccccctgcactttttgctcgcgcc 21153729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 27874113 - 27874056
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||| ||| | ||||||  ||  |||||||||||||||||||||||||    
T  27874113 ctgcgtgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgttgg 27874056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 29714297 - 29714354
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||  | ||||||   |||||||||||||||||||||| |||||    
T  29714297 ctgcgtgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcaggttgg 29714354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 34354477 - 34354420
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||||||   ||||||| ||  |||||||||||||||| ||||||||    
T  34354477 ctgcgtgacttaagtcacgtaccactggcctatgcgcgagttaactcacacacgttgg 34354420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 581
Target Start/End: Original strand, 33802891 - 33802958
Alignment:
Q  514 ctcgcgcctagc-tgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 581  Q
    |||||||||||| ||||||||  || |||||| ||||| ||||||||||||| ||||||||||| ||||    
T  33802891 ctcgcgcctagcatgattttca-aatatacccctgcgtgagttaagtcacgcagcgtgacttaactcac 33802958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 2777973 - 2778030
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||| ||||||||||||| ||||||| ||| ||||||||||||||||||| |||||    
T  2777973 ctgcgtaacttaagtcacacgccactggcctgtgcgcgagttaactcacgcaagttgg 2778030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 31936407 - 31936354
Alignment:
Q  568 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||| | ||||||| ||||||||||||||||||||||| |||||    
T  31936407 gtgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggttgg 31936354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 576
Target Start/End: Complemental strand, 21713364 - 21713273
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||||||||||||||||||| |||||||||||||  || |   | || || || |||||||| |||||||||||||| |||||| ||||    
T  21713364 gaattctgctcttcaccctgcacattttgctcgcgccctgcagccatgccaaaaatgcccttgcgctagttaagtcacgcagcgtgatttaa 21713273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 474 - 521
Target Start/End: Complemental strand, 26974025 - 26973978
Alignment:
Q  474 aattttattttgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  26974025 aattttattttgaattctgctcttctccctgcacttttcgctcacgcc 26973978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 31825928 - 31825892
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31825928 gaattctgctcttcaccctgcacattttgctcgcgcc 31825892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 49065638 - 49065582
Alignment:
Q  565 tgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||||| | ||||||| ||  |||||||||||||||||||| ||||    
T  49065638 tgcgtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcaccttgg 49065582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 54703525 - 54703561
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| |||||||||||||    
T  54703525 gaattctgctcttcaccctgcacattttgctcgcgcc 54703561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 483 - 521
Target Start/End: Original strand, 4674935 - 4674973
Alignment:
Q  483 ttgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  4674935 ttgaatcctgctcttcaccctgcacttttcgctcgcgcc 4674973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 576
Target Start/End: Original strand, 9958203 - 9958233
Alignment:
Q  546 tgcgttagttaagtcacgctgcgtgacttaa 576  Q
    |||||||||||||||||||||||||||||||    
T  9958203 tgcgttagttaagtcacgctgcgtgacttaa 9958233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 27761218 - 27761161
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||||| | ||  |||||||||||||||| ||||||||    
T  27761218 ctgcgtgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgttgg 27761161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 36047092 - 36047055
Alignment:
Q  484 tgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  36047092 tgaattctgctcttcaccctgcacattttgcttgcgcc 36047055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 39834852 - 39834815
Alignment:
Q  484 tgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||| |||||||||||| |||||||||    
T  39834852 tgaattctgctcttccccctgcacttttcgctcgcgcc 39834815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 42039021 - 42039070
Alignment:
Q  572 cttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||| ||||| | ||||||| ||| |||||||||||||||||||||||||    
T  42039021 cttatgtcacgcaccactggcctgtgcgcgagttaactcacgcacgttgg 42039070  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 583
Target Start/End: Original strand, 42118923 - 42118960
Alignment:
Q  546 tgcgttagttaagtcacgctgcgtgacttaagtcacac 583  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  42118923 tgcgtgagttaagtcacgctgcgtgacttaactcacac 42118960  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 52032882 - 52032845
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcct 522  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  52032882 gaattctgctcttcaccctgcacattttactcgcgcct 52032845  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 576
Target Start/End: Complemental strand, 9958247 - 9958211
Alignment:
Q  540 tacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    |||| |||||||||||||||||||| |||||||||||    
T  9958247 taccattgcgttagttaagtcacgcagcgtgacttaa 9958211  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 576
Target Start/End: Complemental strand, 21058753 - 21058717
Alignment:
Q  540 tacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||||||  |||||||||||||||||||||||||    
T  21058753 tacccttgcgcaagttaagtcacgctgcgtgacttaa 21058717  T

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Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 529 - 581
Target Start/End: Complemental strand, 37694667 - 37694615
Alignment:
Q  529 ttttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 581  Q
    |||||| || |||||| ||||| ||||||||||||| ||||||||||| ||||    
T  37694667 ttttccaaatatacccctgcgtgagttaagtcacgcagcgtgacttaactcac 37694615  T

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Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 40361827 - 40361791
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||| ||||||||||||||||||| |||||||||    
T  40361827 gaattcttctcttcaccctgcacttttcgctcgcgcc 40361791  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 39415344 - 39415401
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||||||| ||| ||| |||||||||||||||||||||    
T  39415344 ctgcgtgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttgg 39415401  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 568 - 623
Target Start/End: Original strand, 25574829 - 25574884
Alignment:
Q  568 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttggtc 623  Q
    |||||||||||||| | ||||||| ||  |||||||||||||||||||||||||||    
T  25574829 gtgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtc 25574884  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 568 - 621
Target Start/End: Complemental strand, 6755799 - 6755746
Alignment:
Q  568 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||| |||||||  || ||||||||||||||||||| |||||    
T  6755799 gtgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagttgg 6755746  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 48086841 - 48086898
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||| ||||||||||||| | ||||||| ||  |||||||||||||||||||||||||    
T  48086841 ctgcatgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttgg 48086898  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 500 - 583
Target Start/End: Original strand, 55480345 - 55480427
Alignment:
Q  500 ccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcacac 583  Q
    |||||||||||| ||||||| | |||||||||  | || ||||| |||||| ||||||||||||| |||||| |||| ||||||    
T  55480345 ccctgcacttttcgctcgcgtccagctgatttgtcaaatatacc-ttgcgtgagttaagtcacgcagcgtgaattaactcacac 55480427  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 542 - 576
Target Start/End: Complemental strand, 2182631 - 2182597
Alignment:
Q  542 cccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||||| |||||||||||||||||||||||||    
T  2182631 cccttgcgtaagttaagtcacgctgcgtgacttaa 2182597  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 37280603 - 37280639
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||| || ||||||||||    
T  37280603 gaattctgctcttcaccctgcacattctgctcgcgcc 37280639  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 39417993 - 39417957
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  39417993 gaattctgctcttcaccctccacattttgctcgcgcc 39417957  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 485 - 581
Target Start/End: Complemental strand, 41192582 - 41192486
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgctgcgtgacttaagtcac 581  Q
    ||||||||||||||||||||||| ||||| |||||||  ||   |||||| || ||| || ||||| ||||||||||||| ||| ||||||| ||||    
T  41192582 gaattctgctcttcaccctgcacattttgttcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgcagcgagacttaactcac 41192486  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 485 - 564
Target Start/End: Complemental strand, 34620081 - 34620002
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcctagctgattttcccaacatacccttgcgttagttaagtcacgc 564  Q
    ||||||||||||||||||||||| |||||||||||||  ||   |||||| || ||| || ||||| |||||||||||||    
T  34620081 gaattctgctcttcaccctgcacattttgctcgcgccctgcactttttccaaatataaccctgcgtgagttaagtcacgc 34620002  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 29908501 - 29908558
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||||||| | ||||||| ||  ||||||||||||||| |||||||||    
T  29908501 ctgcgtgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgttgg 29908558  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 521
Target Start/End: Complemental strand, 42242155 - 42242115
Alignment:
Q  481 ttttgaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||||||| |||||||||||||||||| |||||||||||||    
T  42242155 ttttgaatactgctcttcaccctgcacattttgctcgcgcc 42242115  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 567 - 621
Target Start/End: Complemental strand, 29132720 - 29132666
Alignment:
Q  567 cgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||| | |||| || ||  |||||||||||||||||||||||||    
T  29132720 cgtgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgttgg 29132666  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 518
Target Start/End: Original strand, 32733930 - 32733967
Alignment:
Q  481 ttttgaattctgctcttcaccctgcactttttgctcgc 518  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  32733930 ttttgaattctgctcttcaccatgcacattttgctcgc 32733967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 578
Target Start/End: Complemental strand, 18206938 - 18206910
Alignment:
Q  550 ttagttaagtcacgctgcgtgacttaagt 578  Q
    |||||||||||||||||||||||||||||    
T  18206938 ttagttaagtcacgctgcgtgacttaagt 18206910  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 42882455 - 42882491
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  42882455 gaattctgctcttcaccctgcacttttcgctcacgcc 42882491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 43837507 - 43837543
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||| |||||||||||||||||| |||||||||||||    
T  43837507 gaatactgctcttcaccctgcacattttgctcgcgcc 43837543  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 519
Target Start/End: Original strand, 5741178 - 5741212
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcg 519  Q
    |||||||||||||||||||||||||||||||||||    
T  5741178 gaattctgctcttcaccctgcactttttgctcgcg 5741212  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 568 - 621
Target Start/End: Original strand, 319227 - 319280
Alignment:
Q  568 gtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    |||||||||||||  | ||||||||||  |||||||||||||||||||||||||    
T  319227 gtgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgg 319280  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 564 - 621
Target Start/End: Original strand, 13312585 - 13312642
Alignment:
Q  564 ctgcgtgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||||||   ||||||| |||||| |||||||||||||| |||||||    
T  13312585 ctgcgtgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgttgg 13312642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 5741602 - 5741566
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||||||||||||||||||||||||| |||||||||    
T  5741602 gaattctgctcttcaccctgcacttttcgctcgcgcc 5741566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 485 - 521
Target Start/End: Complemental strand, 9521523 - 9521487
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9521523 gaattctgctcttccccctgcactttttgctcgcgcc 9521487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 546 - 576
Target Start/End: Original strand, 13312535 - 13312565
Alignment:
Q  546 tgcgttagttaagtcacgctgcgtgacttaa 576  Q
    |||||||||||||||||||||||||||||||    
T  13312535 tgcgttagttaagtcacgctgcgtgacttaa 13312565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 521
Target Start/End: Original strand, 11598907 - 11598943
Alignment:
Q  485 gaattctgctcttcaccctgcactttttgctcgcgcc 521  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  11598907 gaattttgctcttcaccctgcacattttgctcgcgcc 11598943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 569 - 621
Target Start/End: Complemental strand, 3808 - 3756
Alignment:
Q  569 tgacttaagtcacaccccactggtctgggcgcgagttaactcacgcacgttgg 621  Q
    ||||||||||||||| ||||||| ||  |||||||||||||||||||| ||||    
T  3808 tgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttgg 3756  T

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Target: scaffold0010 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 546 - 575
Target Start/End: Original strand, 34769 - 34798
Alignment:
Q  546 tgcgttagttaagtcacgctgcgtgactta 575  Q
    ||||||||||||||||||||||||||||||    
T  34769 tgcgttagttaagtcacgctgcgtgactta 34798  T

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Target: scaffold1212 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1212
Description:

Target: scaffold1212; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 540 - 576
Target Start/End: Complemental strand, 1838 - 1802
Alignment:
Q  540 tacccttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||||||  |||||||||||||||||||||||||    
T  1838 tacccttgcgcaagttaagtcacgctgcgtgacttaa 1802  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 544 - 576
Target Start/End: Complemental strand, 232479 - 232447
Alignment:
Q  544 cttgcgttagttaagtcacgctgcgtgacttaa 576  Q
    ||||||||||||||||||||| |||||||||||    
T  232479 cttgcgttagttaagtcacgcagcgtgacttaa 232447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 484 - 516
Target Start/End: Original strand, 256390 - 256422
Alignment:
Q  484 tgaattctgctcttcaccctgcactttttgctc 516  Q
    |||||||||||||||||||||||| ||||||||    
T  256390 tgaattctgctcttcaccctgcacattttgctc 256422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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