View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_4 (Length: 473)

Name: NF18159_low_4
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_4
NF18159_low_4
[»] chr2 (2 HSPs)
chr2 (1-456)||(3808934-3809388)
chr2 (7-111)||(38576726-38576830)
[»] chr1 (4 HSPs)
chr1 (54-103)||(33099478-33099527)
chr1 (8-80)||(3232181-3232253)
chr1 (71-110)||(52432847-52432886)
chr1 (177-245)||(49897915-49897985)
[»] scaffold0136 (1 HSPs)
scaffold0136 (187-246)||(36943-37004)
[»] chr7 (1 HSPs)
chr7 (63-103)||(29152341-29152381)
[»] chr5 (2 HSPs)
chr5 (343-442)||(33350175-33350272)
chr5 (72-110)||(972843-972881)
[»] chr4 (1 HSPs)
chr4 (206-246)||(22050896-22050937)
[»] scaffold0047 (1 HSPs)
scaffold0047 (75-111)||(62753-62789)
[»] chr8 (1 HSPs)
chr8 (72-108)||(32166658-32166694)
[»] chr6 (1 HSPs)
chr6 (72-108)||(32342616-32342652)
[»] chr3 (1 HSPs)
chr3 (72-108)||(42091814-42091850)


Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 3809388 - 3808934
Alignment:
Q  1 catggataatttacctctagtgataggtaggatttgattctagaacgaaagaaattgagattacatgttgaatgaagaagtttgatgttttttagatgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |    
T  3809388 catggataatttacctctagtgataggtaggatttgattctagaacgaaagaaattaagattacatgttgaatgaagaagtttgatgttttttagatgga 3809289  T
Q  101 aatgataactgcacgcataaaaactgcaattgttaggcctacattatttggtgaggaattgagggaaatttatcattaatgacgattaggattcgattat 200  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  3809288 aatgttaactgcacgcagaaaaactgcaattgtaaggcctacattatttggtggggaatcgagggaaatttatcattaatgacgattaggattcgattat 3809189  T
Q  201 aaacaaatgagatgaagatcacatgtgaatgaaggagacgaagaaaataagcattttctttgataggataaattatctccaattcatcaagaagtgatgt 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  3809188 aaacaaatgagatgaagatcacatgtgaatgaaggagacgaaaaaaataagaattttctttgatagaataaattacctccaattcatcaagaagtgatgt 3809089  T
Q  301 aaaaataacattctagtggtcatctacttttaggagtgatttgtgagcctttcgcagggtgttttgttgtattgtgttttgtaactttggtccatcttgg 400  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  3809088 aaaaa-aacattctagttgtcatctacttttagtagtgatttgtgagcctttggcagggtgttttgttgtattgtgttttgtaactttgatccatcttgg 3808990  T
Q  401 tattcatcttgtgcatgatttagtttttaatgaaagtatttattttcccttaaaag 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3808989 tattcatcttgtgcatgatttagtttttaatgaaagtatttattttcccttaaaag 3808934  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 38576726 - 38576830
Alignment:
Q  7 taatttacctctagtgataggtaggatttgattctagaacgaaagaaattgagattacatgttgaatgaagaagtttgatgttttttagatgaaaatgat 106  Q
    ||||||||||| | ||| | ||| |||| |||| | ||| ||| || || ||||  ||||||||||||||||||||||||  | || ||||||||||| |    
T  38576726 taatttacctcaaatgacaagtatgattcgattttggaatgaaggatatggagaacacatgttgaatgaagaagtttgattatattgagatgaaaatggt 38576825  T
Q  107 aactg 111  Q
    |||||    
T  38576826 aactg 38576830  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 33099478 - 33099527
Alignment:
Q  54 attgagattacatgttgaatgaagaagtttgatgttttttagatgaaaat 103  Q
    |||||||  ||||||||||||||||||||||||||| |||||||||||||    
T  33099478 attgagaacacatgttgaatgaagaagtttgatgttctttagatgaaaat 33099527  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 3232253 - 3232181
Alignment:
Q  8 aatttacctctagtgataggtaggatttgattctagaacgaaagaaattgagattacatgttgaatgaagaag 80  Q
    |||||||||||| ||||| ||| |||| ||| ||||||  ||||| || ||||||||||||||||||||||||    
T  3232253 aatttacctctaatgataagtatgattcgatactagaagtaaagagatggagattacatgttgaatgaagaag 3232181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 110
Target Start/End: Complemental strand, 52432886 - 52432847
Alignment:
Q  71 aatgaagaagtttgatgttttttagatgaaaatgataact 110  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  52432886 aatgaagaagtttgatgtttttgagaagaaaatgataact 52432847  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 49897985 - 49897915
Alignment:
Q  177 taatgacgattaggattcgattata-aacaaatgagatgaagatcacatg-tgaatgaaggagacgaagaa 245  Q
    ||||||| |||| ||||||||| || |||||| |||||| |||||||||| ||||||||||||| ||||||    
T  49897985 taatgacaattatgattcgattctagaacaaaggagatggagatcacatgttgaatgaaggagaagaagaa 49897915  T

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Target: scaffold0136 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 36943 - 37004
Alignment:
Q  187 taggattcgattat-aaacaaatgagatgaagatcacatg-tgaatgaaggagacgaagaaa 246  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||| || |||| |||||||    
T  36943 taggattcgattatgaaacaaatgagatgaagatcacatgttgaataaacgagatgaagaaa 37004  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 29152341 - 29152381
Alignment:
Q  63 acatgttgaatgaagaagtttgatgttttttagatgaaaat 103  Q
    ||||||||||||||||||||||||||| || ||||||||||    
T  29152341 acatgttgaatgaagaagtttgatgttattgagatgaaaat 29152381  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 442
Target Start/End: Original strand, 33350175 - 33350272
Alignment:
Q  343 gtgagcctttcgcagggtgttttgttgtattgtgttttgtaactttggtccatcttggtattcatcttgtgcatgatttagtttttaatgaaagtattta 442  Q
    |||||||||| || |||||||||||| ||||||  | |||||||| | ||||| || |  |||||||||||| |||||| |||||||| |||| ||||||    
T  33350175 gtgagcctttggctgggtgttttgttctattgt--tctgtaacttcgctccattttcgggttcatcttgtgcttgatttggtttttaaagaaaatattta 33350272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 972881 - 972843
Alignment:
Q  72 atgaagaagtttgatgttttttagatgaaaatgataact 110  Q
    |||||||||||||||||| || |||||||||||||||||    
T  972881 atgaagaagtttgatgttcttgagatgaaaatgataact 972843  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 246
Target Start/End: Complemental strand, 22050937 - 22050896
Alignment:
Q  206 aatgagatgaagatcacatg-tgaatgaaggagacgaagaaa 246  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  22050937 aatgagatgaagatcacatgttgaatgaaggagatgaagaaa 22050896  T

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Target: scaffold0047 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 62753 - 62789
Alignment:
Q  75 aagaagtttgatgttttttagatgaaaatgataactg 111  Q
    |||||||||||||||||| |||||||| |||||||||    
T  62753 aagaagtttgatgtttttaagatgaaattgataactg 62789  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 32166658 - 32166694
Alignment:
Q  72 atgaagaagtttgatgttttttagatgaaaatgataa 108  Q
    |||||||||||||||||| || |||||||||||||||    
T  32166658 atgaagaagtttgatgttcttgagatgaaaatgataa 32166694  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 32342652 - 32342616
Alignment:
Q  72 atgaagaagtttgatgttttttagatgaaaatgataa 108  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  32342652 atgaaaaagtttgatgtttttgagatgaaaatgataa 32342616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 42091814 - 42091850
Alignment:
Q  72 atgaagaagtttgatgttttttagatgaaaatgataa 108  Q
    ||||| ||||||||||||||| |||||||||||||||    
T  42091814 atgaaaaagtttgatgtttttgagatgaaaatgataa 42091850  T

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