View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18159_low_5 (Length: 458)
Name: NF18159_low_5
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18159_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 13 - 442
Target Start/End: Complemental strand, 55456510 - 55456081
Alignment:
| Q |
13 |
aaggcacatgaaaaatacttattggcgtctcatgatatgcttctacaaagcactttggagaatggaagttacaataaactccacagttataaacacataa |
112 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
55456510 |
aaggcacatgaaaaatacttattagcgtctcatgacatgcttctacaaagcactttggagaatggaagttataataaactccacagttataaacacataa |
55456411 |
T |
|
| Q |
113 |
ttaatggcttctctgttcacacaaccccttcccaggttcatctccatatccatttcaatcatttttatatagtacatgcatgcactaaagttattgaatc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456410 |
ttaatggcttctctgttcacacaaccccttcccaggttcatctccatatccatttcaatcatttttatatagtacatgcatgcactaaagttattgaatc |
55456311 |
T |
|
| Q |
213 |
cattgccaaatatatcaggcaaaaagactaagagctacaccaggagtgaagttagtagagaaagatagaggagtgaaactgatgacaacatacactcctg |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456310 |
cattgccaaaaatatcaggcaaaaagactaagagctacaccaggagtgaagttagtagagaaagatagaggagtgaaactgatgacaacatacactcctg |
55456211 |
T |
|
| Q |
313 |
actttcttaacttaccaaaaggattatgggcacaagaaggaggtgacaaaaatgcaggtgatggaattgttattggtattgttgatagtggcattaatcc |
412 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55456210 |
attttcttaacttgccaaaaggattatgggcacaagtaggaggtgacaaaaatgcaggtgatggaattgttattggtattgttgatagtggcattaatcc |
55456111 |
T |
|
| Q |
413 |
aattcatccaagctttgcttaccaaccttt |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55456110 |
aattcatccaagctttgcttaccaaccttt |
55456081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University