View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18159_low_7 (Length: 449)

Name: NF18159_low_7
Description: NF18159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18159_low_7
NF18159_low_7
[»] scaffold0115 (3 HSPs)
scaffold0115 (215-439)||(35570-35794)
scaffold0115 (122-225)||(35280-35382)
scaffold0115 (1-75)||(35197-35271)
[»] chr3 (1 HSPs)
chr3 (163-344)||(15673101-15673282)


Alignment Details
Target: scaffold0115 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 215 - 439
Target Start/End: Original strand, 35570 - 35794
Alignment:
Q  215 attcatttttatggttttcaaacacccactctcattcgtcatcaaagaccacatctagaataattgttatctttttgttgtttgagttgtataacttgta 314  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35570 attcctttttatggttttcaaacacccactctcattcgtcatcaaagaccacatctagaataattgctatctttttgttgtttgagttgtataacttgta 35669  T
Q  315 gcactttgaactttgagcataaccgacaaatattaatctttcacttatgaaatgttaacataagctacactcctgaacactcccaagtgtgaaatacaag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35670 gcactttgaactttgagcataaccgacaaatattaatctttcacttatgaaatgttaacataagctacactcctgaacactcccaagtgtgaaatacaag 35769  T
Q  415 gatatcttcaaatccattcttcttc 439  Q
    |||||||||||||||||||||||||    
T  35770 gatatcttcaaatccattcttcttc 35794  T

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Target: scaffold0115; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 122 - 225
Target Start/End: Original strand, 35280 - 35382
Alignment:
Q  122 ttggtgtcttcatataagtggattgtgttggtcatgagattacttgttgaacttctctagatgattcttattccaattcaggaaagacattatattcatt 221  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||    
T  35280 ttggtgtcttcatataagtggattgtgttgatcatgagattacttgttgaacttctcta-acgattcttattccaattcaggaaagacattatattcttt 35378  T
Q  222 ttta 225  Q
    ||||    
T  35379 ttta 35382  T

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Target: scaffold0115; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 35197 - 35271
Alignment:
Q  1 tcacacattgataacttcaatctacacaccattggtgttctaactagcttgcaactattcctcttgtatatatct 75  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35197 tcacactttgataacttcaatcaacacaccattggtgttctaactagcttgcaactatacctcttgtatatatct 35271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 344
Target Start/End: Original strand, 15673101 - 15673282
Alignment:
Q  163 acttgttgaacttctctagatgattcttattccaattcaggaaagacattatattcatttttatggttttcaaacacccactctcattcgtcatcaaaga 262  Q
    |||||||||||||||  ||| | ||||| ||| ||||| |||||||  |||| ||| |||||||| | | ||||  |||| |||| ||| ||||| ||||    
T  15673101 acttgttgaacttcttgagacgtttcttcttcgaattcgggaaagaatttatgttcctttttatgttctccaaagtcccattctccttcttcatctaaga 15673200  T
Q  263 ccacatctagaataattgttatctttttgttgtttgagttgtataacttgtagcactttgaactttgagcataaccgacaaa 344  Q
    |||||||| |  |||||   ||||| || |||| || ||||||||||||||||| ||| || |||||| |||||||||||||    
T  15673201 ccacatctcggctaattacaatcttgtttttgtctgggttgtataacttgtagcccttcgagctttgatcataaccgacaaa 15673282  T

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