View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_high_1 (Length: 420)
Name: NF18160_high_1
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 24321118 - 24320795
Alignment:
| Q |
16 |
atatcattacaattgaatattggtttccactttactctctcgaatacaatagatatgaaacaataagtgctaattagagatgtcttgagtccaattattg |
115 |
Q |
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| T |
24321118 |
atatcattacaattgaatattggtttccactttactctctcgaatccaatagatatgaaacaataagtgctaattagagatgtcttgagtccaattattg |
24321019 |
T |
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| Q |
116 |
acaatatcagcaaaatgatcctcatgcaaattttctcagaaaaagagcagtttacatcatctttgatatgactacagaaaccaacagtaaatttttatga |
215 |
Q |
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| T |
24321018 |
acaatatcagcaaaatgatcctcatgcaaattttctcagaaaaagagcagtttacatcatctttgatatgactacggaaaccaacagtaaatttttatga |
24320919 |
T |
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| Q |
216 |
tt----ttacatattggtaatgatcatagaattaaaacaagtcataatgaaaaaacttttcgctatatttaatgcatgtgcaagagtagtggagtttctt |
311 |
Q |
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| T |
24320918 |
ttttacttacatattggtaatgatcatagaattaaaacaagtcataatgaaaaaacttttcgctatatttaatgcatgtgcaagagtagtggagtttctt |
24320819 |
T |
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| Q |
312 |
ttttcttgtgattccatcatataa |
335 |
Q |
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| T |
24320818 |
ttttcttgtgattccatcatataa |
24320795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 24320775 - 24320698
Alignment:
| Q |
306 |
tttcttttttcttgtgattccatcatataagtataacccacatgttgctttgacactataggcaaattctatattatatcactt |
389 |
Q |
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| T |
24320775 |
tttcttttttcttgtgattccatcatataa------cccacatgttgctttgacactataggcaaattctatattatatcactt |
24320698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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