View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_high_6 (Length: 297)
Name: NF18160_high_6
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 47 - 288
Target Start/End: Original strand, 7192217 - 7192458
Alignment:
| Q |
47 |
aacctgagaaagccaatggaggcttgaagaagagtgcacaaagtgaagggacttggttgggaagagtctaccataaaaagtgcccggtacagcagaaaca |
146 |
Q |
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| T |
7192217 |
aaccttagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtctaccataaaaagtgcccggtacagcagaaaca |
7192316 |
T |
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| Q |
147 |
aaacaattagaaccattgtgatgatgatgattattatttcccttttgttggcttaattttttgtggaaagatggcaaagaagcaaaaatgttgttgaagt |
246 |
Q |
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| T |
7192317 |
aaacaattagaaccattgtgatcatgatgattattatttcccttttgttggcttaattttttgtggaaagatggcaaagaagcaaaaatgttgttgaagt |
7192416 |
T |
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| Q |
247 |
cattggtgaaaaggtcattcatatataacattagctcctttg |
288 |
Q |
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| T |
7192417 |
cattggtgaaaaggtcattcatatataacattagctcctttg |
7192458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 7179017 - 7179289
Alignment:
| Q |
16 |
atatactaattaagtgtttggagaacaaactaacctgagaaagccaatggaggcttgaagaagagtgcacaaagtgaagggacttggttgggaagagtct |
115 |
Q |
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| T |
7179017 |
atatactaattaagtgtttggagaacaaactaacctgagaaagccaatggaggcttgaagaagagtgcacaaaatgaagggacttagttgggaagagtct |
7179116 |
T |
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| Q |
116 |
accataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgatgatgatgattattatttcccttttgttggcttaattttttgtggaaa |
215 |
Q |
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| T |
7179117 |
accataaaaagtgcccggtacagcagaaacaaaacaattagaaccattgtgattatcatgattattgtatcccatgtcttgccttagttttttgtgaaaa |
7179216 |
T |
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| Q |
216 |
gatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatataacattagctcctttg |
288 |
Q |
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| T |
7179217 |
gatggcaaagaagcaaaaatgttgttgaagtcattggtgaaaaggtcattcatatacaacattagttcctttg |
7179289 |
T |
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