View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_low_1 (Length: 680)
Name: NF18160_low_1
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 342 - 673
Target Start/End: Complemental strand, 38611569 - 38611243
Alignment:
| Q |
342 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcggccaagcacatcattaaaagttaatactactatactactcaatctgaataa |
441 |
Q |
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| T |
38611569 |
gtccgccatgctgcctgtttgaaagttgtgtggtcttgacctttcatcagccaagcacatcattaaaagttaatactacta-----ctcaatctgaataa |
38611475 |
T |
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| Q |
442 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
541 |
Q |
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| T |
38611474 |
acttgctgtcttttttggatggtgttgaataatttactttaaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatga |
38611375 |
T |
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| Q |
542 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt |
641 |
Q |
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| T |
38611374 |
caactttcacgtcacaatacaagacaccgtaaatatcatcctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatacctttt |
38611275 |
T |
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| Q |
642 |
ttctacttttgcagttcatcacaggttctgct |
673 |
Q |
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| T |
38611274 |
ttttacttttgcagttcatcacagtttctgct |
38611243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 17 - 283
Target Start/End: Complemental strand, 38611981 - 38611715
Alignment:
| Q |
17 |
aaagttgaccttctccttccgattacaaaaatacatgttattcccgacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaac |
116 |
Q |
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| T |
38611981 |
aaagttgaccttctccttccgattacaaaaatacatggtattccccacctgcatagttattatacaagtaagttaagagtaaattattggaaacaaaaac |
38611882 |
T |
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| Q |
117 |
attgagatatccacagccannnnnnnnnnnnnnnnnnnacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtc |
216 |
Q |
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| T |
38611881 |
attgagatatccacagccagtttgttgttgttgttgttacgctagattttgaggtgaaggactgaagtggttgttttagctcttatcaaattcacgggtc |
38611782 |
T |
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| Q |
217 |
tacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacattt |
283 |
Q |
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| T |
38611781 |
tacatcaaggagttctaaatcagattcaaacagttcatcatcaattagggatattagcaaaacattt |
38611715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 482 - 636
Target Start/End: Complemental strand, 34726741 - 34726587
Alignment:
| Q |
482 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
581 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||||||||||| ||||||| |||| | |||||||||||||| |
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| T |
34726741 |
aaatgctgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacaactttcaaatcacaatgcaaggcgccgtaaatatcatc |
34726642 |
T |
|
| Q |
582 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
636 |
Q |
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| || ||||||||||||| ||||| |||||||||| |||| | |||||||||| |
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| T |
34726641 |
gtcaagctgtccaatcaagccaatcggctttgtcttattcacgcagtggtaatac |
34726587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 482 - 636
Target Start/End: Complemental strand, 34721613 - 34721459
Alignment:
| Q |
482 |
aaatgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatc |
581 |
Q |
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|||| ||||||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||||||| |||||| |||| | |||||| || || |
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| T |
34721613 |
aaatactgaaggttccatgatctgtttgagtttgatggaaagaagaaaagctgcagacgacgtctttcacaacacaatgcaaggcgccgtaatcattctc |
34721514 |
T |
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| Q |
582 |
ctgaatctgtccaatcaagtcaatcagctttgtcttcttcatcctgtggtaatac |
636 |
Q |
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| T |
34721513 |
gtaaaactgcccaatcaagtcaatcagctttgtcttcgtcaccctgtggtaatac |
34721459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 485 - 618
Target Start/End: Complemental strand, 34730952 - 34730819
Alignment:
| Q |
485 |
tgctgaaggttccatgatctgtttgagttcgatgaaaagaagagaagctgcagatgacaactttcacgtcacaatacaagacaccgtaaatatcatcctg |
584 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||| |||| | ||||| |||| |||| |
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| T |
34730952 |
tgctgaaggttccacaatctggctgagttcgatgaaaagaaaagaagctgcagagaacaactttcacgtcacaatgcaaggcgacgtaagcatcagcctg |
34730853 |
T |
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| Q |
585 |
aatctgtccaatcaagtcaatcagctttgtcttc |
618 |
Q |
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|| | |||||||||||||||||| ||||||||| |
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| T |
34730852 |
aagcactccaatcaagtcaatcagttttgtcttc |
34730819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 395 - 473
Target Start/End: Complemental strand, 34726843 - 34726770
Alignment:
| Q |
395 |
agcacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttggatggtgttgaataa |
473 |
Q |
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|||||||||||||||||||||| || || |||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
34726843 |
agcacatcattaaaagttaatattaata-----ctcaatctgattcaacttgctgtcttttttggatggtgttgaataa |
34726770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 34722229 - 34722165
Alignment:
| Q |
215 |
tctacatcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaac |
279 |
Q |
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| T |
34722229 |
tctacatcagggagttcgaaatcagattcaatcagttcatcaccaactagggatattagcaaaac |
34722165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 468
Target Start/End: Complemental strand, 34730996 - 34730951
Alignment:
| Q |
423 |
tactactcaatctgaataaacttgctgtcttttttggatggtgttg |
468 |
Q |
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| T |
34730996 |
tactactcagtctgattaaacttgctgtcttttttgaatggtgttg |
34730951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 397 - 460
Target Start/End: Complemental strand, 34721713 - 34721655
Alignment:
| Q |
397 |
cacatcattaaaagttaatactactatactactcaatctgaataaacttgctgtcttttttgga |
460 |
Q |
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|||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |
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| T |
34721713 |
cacatcattaaaagttaata-----ttactactcaatctgattcaacttgctgtcttttttgga |
34721655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 281
Target Start/End: Complemental strand, 34731519 - 34731457
Alignment:
| Q |
219 |
catcaaggagttctaaatcagattcaaacagttcatcttcaattagggatattagcaaaacat |
281 |
Q |
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||||||||||||| ||||||| |||||| |||||||| | || |||| ||| ||||||||||| |
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| T |
34731519 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacat |
34731457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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