View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_low_3 (Length: 414)
Name: NF18160_low_3
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_low_3 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 6914198 - 6914585
Alignment:
| Q |
10 |
attattctcggccaaatgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcattagtgctgaagcagggaacttggatttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6914198 |
attattctcggccaaatgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttcattagtgctgaagcagggaacttggatttt |
6914297 |
T |
|
| Q |
110 |
atgggaaacagtcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtaaactcatatcca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6914298 |
atgggaaacagtcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtgaactcatatcca |
6914397 |
T |
|
| Q |
210 |
aatggggtgcctacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagcgacatccttctggttacgtgtaagagcagtggtcgtg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6914398 |
aatggggtgcctacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagtgacatccttctggttacgtgtaagagcagtggtcgtg |
6914497 |
T |
|
| Q |
310 |
ccattcatctggtcacgaatgggaatggatggcaccaacagcatggtttcaggtcacatgtaagctgtcagaaacagtattgcaaaat |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6914498 |
ccattcatctggtcacgaatgggaatggatggcaccaacagcatggtttcaggtcacatgtaagctgtcagaaacagtattgcaaaat |
6914585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 394
Target Start/End: Original strand, 6879882 - 6880011
Alignment:
| Q |
267 |
aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtc |
364 |
Q |
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| T |
6879882 |
aacagctacatacttctagttgtgtgtaagagcagtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagagcatggtttcaggtc |
6879981 |
T |
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| Q |
365 |
acatgtaagctgtcagaaacagtattgcaa |
394 |
Q |
| |
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|||||||||| |||||||| || ||||||| |
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| T |
6879982 |
acatgtaagcggtcagaaagagcattgcaa |
6880011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 6897454 - 6897574
Alignment:
| Q |
267 |
aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtc |
364 |
Q |
| |
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|||||| |||| ||||||||| |||| |||||||||||| |||||||||| ||||||||| || |||||||||||| | || |||||||||||||||| |
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| T |
6897454 |
aacagctacatacttctggttgtgtgtgagagcagtggtcatgccattcatttggtcacgagtgagaatggatggcaacaaaagagcatggtttcaggtc |
6897553 |
T |
|
| Q |
365 |
acatgtaagctgtcagaaaca |
385 |
Q |
| |
|
|||||||||| ||| |||||| |
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|
| T |
6897554 |
acatgtaagcggtctgaaaca |
6897574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 267 - 385
Target Start/End: Original strand, 6242688 - 6242808
Alignment:
| Q |
267 |
aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacca--acagcatggtttcaggtc |
364 |
Q |
| |
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|||||| |||| ||| ||||| |||| |||||||||||| |||||||| | |||||||||||| |||||||| ||| || | |||||||||||||||| |
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| T |
6242688 |
aacagcaacatacttttggttgtgtgtgagagcagtggtcatgccattcgtttggtcacgaatgagaatggatcgcaacaagagagcatggtttcaggtc |
6242787 |
T |
|
| Q |
365 |
acatgtaagctgtcagaaaca |
385 |
Q |
| |
|
|||||||||| |||||||||| |
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| T |
6242788 |
acatgtaagcagtcagaaaca |
6242808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 366
Target Start/End: Original strand, 6256452 - 6256689
Alignment:
| Q |
121 |
tcacaagaataacgaagatgggattatatagtgaattatattaaaaagaattacaaacgcatcaagcctcagcagtaaactcatatccaaatggggtgcc |
220 |
Q |
| |
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||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||| || |||| || || || |||||||||||| || ||| |
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| T |
6256452 |
tcacaagaataacaaagagaagattatatggtgaattatattaaaaagaattacatgtgcaataaacctccgc-gtcaa--catatccaaatgcggggcc |
6256548 |
T |
|
| Q |
221 |
tacaattaaaccaagcatgtgttttgtggatgtggaacaaacagacaacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctg |
320 |
Q |
| |
|
||||||| |||| ||||| | |||||||| |||||||| ||||||||||||||||||||| | | ||||| |||||| ||||||| ||||| |
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| T |
6256549 |
tacaattggaccatgcatgagctttgtggaagtggaaca-------aacagcgacatccttctggttgtgcatgagagcggtggtcatgccattgatctg |
6256641 |
T |
|
| Q |
321 |
gtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcac |
366 |
Q |
| |
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|||| ||||| |||||||| || | || |||||||||||||||||| |
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| T |
6256642 |
gtcatgaatgataatggatgccaacaaaagagcatggtttcaggtcac |
6256689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 267 - 372
Target Start/End: Original strand, 6166264 - 6166371
Alignment:
| Q |
267 |
aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcaccaacag--catggtttcaggtc |
364 |
Q |
| |
|
|||||| |||| |||||||| |||| ||||| |||||| |||||||||| |||||||||||| |||||||||||| ||| || |||||||||||||| |
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|
| T |
6166264 |
aacagctacatatttctggttgtgtgtgagagcggtggtcatgccattcatttggtcacgaatgagaatggatggcaacaaaagatcatggtttcaggtc |
6166363 |
T |
|
| Q |
365 |
acatgtaa |
372 |
Q |
| |
|
|||||||| |
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|
| T |
6166364 |
acatgtaa |
6166371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 6851691 - 6851607
Alignment:
| Q |
290 |
gtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtcacatgtaa |
372 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||| |||| |||||||||||| | || |||||||||||||||||||||||| |
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|
| T |
6851691 |
gtgtgagaggagtggtggtgccattcatctggtcacaaatgagaatggatggcaacaaaatagcatggtttcaggtcacatgtaa |
6851607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 266 - 373
Target Start/End: Complemental strand, 6724704 - 6724595
Alignment:
| Q |
266 |
caacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcaccaaca--gcatggtttcaggt |
363 |
Q |
| |
|
|||||| | ||| ||||||||| | || |||| |||||| |||||||||||||||||||||||| || ||||||||| ||| | ||||||||||||| |
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|
| T |
6724704 |
caacagaggcattcttctggttgtgcgtgagaggagtggttgtgccattcatctggtcacgaatgagattggatggcaacaaaatcacatggtttcaggt |
6724605 |
T |
|
| Q |
364 |
cacatgtaag |
373 |
Q |
| |
|
|||||||||| |
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|
| T |
6724604 |
cacatgtaag |
6724595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 6235448 - 6235532
Alignment:
| Q |
302 |
tggtcgtgccattcatctggtcacgaatgggaatggatggcaccaacagc--atggtttcaggtcacatgtaagctgtcagaaac |
384 |
Q |
| |
|
||||| |||||||||| |||||| ||||| |||||||||||| ||| || | ||||||||||||||||||||| ||||||||| |
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|
| T |
6235448 |
tggtcatgccattcatttggtcatgaatgagaatggatggcaacaaaagagaacggtttcaggtcacatgtaagcggtcagaaac |
6235532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 6593979 - 6593906
Alignment:
| Q |
302 |
tggtcgtgccattcatctggtcacgaatgggaatggatggcaccaaca--gcatggtttcaggtcacatgtaag |
373 |
Q |
| |
|
|||| |||||||||||||||||| ||||| || || |||||| || | |||||||||||||||||||||||| |
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|
| T |
6593979 |
tggttgtgccattcatctggtcatgaatgagattgaatggcaaaaaaatcgcatggtttcaggtcacatgtaag |
6593906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 8573069 - 8573015
Alignment:
| Q |
26 |
tgaaaattacagaaattcattaaaagaaagaggtactggaccagatgagccttca |
80 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||| |||| || |||||| |||| |
|
|
| T |
8573069 |
tgaaaattacaggaattcatgaaaagaaagaggtattggagcaaatgagctttca |
8573015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 75
Target Start/End: Original strand, 6233832 - 6233880
Alignment:
| Q |
27 |
gaaaattacagaaattcattaaaagaaagaggtactggaccagatgagc |
75 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||| ||||||| |||||| |
|
|
| T |
6233832 |
gaaaattacaggaattcatgaaaagaaagatgtattggaccaaatgagc |
6233880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 267 - 373
Target Start/End: Complemental strand, 14146 - 14038
Alignment:
| Q |
267 |
aacagcgacatccttctggttacgtgtaagagcagtggtcgtgccattcatctggtcacgaatgggaatggatggcacc--aacagcatggtttcaggtc |
364 |
Q |
| |
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||||||| ||| |||||||| |||| |||| |||||| ||||||||||| ||||||| |||| |||||||||||| | || |||||||||||||||| |
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| T |
14146 |
aacagcggcattcttctggtcgtgtgtgagaggagtggttgtgccattcatttggtcacaaatgagaatggatggcaacaaaatagcatggtttcaggtc |
14047 |
T |
|
| Q |
365 |
acatgtaag |
373 |
Q |
| |
|
||||||||| |
|
|
| T |
14046 |
acatgtaag |
14038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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