View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_low_4 (Length: 353)
Name: NF18160_low_4
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 11759437 - 11759095
Alignment:
| Q |
1 |
gaagtaactaaccgcatgcacgagtaaaaagaaaagtgcacatattccatgtactataatgtgaatttaacccacacacttcattttatttcacatttta |
100 |
Q |
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| T |
11759437 |
gaagtaactaaccgcatgcacgagtaaaaagaaaagtgcacatattccatgtactaaaatgtgaatttaacccacacacttcattttatttcacatttga |
11759338 |
T |
|
| Q |
101 |
taaatatttgattgatcacatttctcactctcgttcatgttcttattttctaaccttcaaaagcgtgtctcacaagacaagtggaagctcctaagtacta |
200 |
Q |
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| T |
11759337 |
taaatatttgattgatcacatttctcactctcgttcttgttcttattttctaaccttcaaaagcgtgtctcacaagacaagtggaagctactaagtacta |
11759238 |
T |
|
| Q |
201 |
actgattctccaaca------atctcatcacactcttcaagcgtgctctctcacatgcaacactacttaataacgaactactagcttttaattaagtaat |
294 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759237 |
actgattctccaacaatctttatctcatcacactcttcaagcgtgctctctcacatgcaacactacttaataacgaactactagcttttaattaagtaat |
11759138 |
T |
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| Q |
295 |
aacaaataaataaaaataacaactacattcaaacgcaaagcct |
337 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11759137 |
aacaaataaataaaaataactactacattcaaacgcaaagcct |
11759095 |
T |
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