View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_low_6 (Length: 316)
Name: NF18160_low_6
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 11759533 - 11759840
Alignment:
| Q |
1 |
tataagattatagaaattattatagtattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaa |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759533 |
tataagattatagaaattattataatattaacattttggcatgcctgtaaccataggctagcaaaacaacttatacaacaatgatctaaaaatttaagaa |
11759632 |
T |
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| Q |
101 |
tttaatttgtatatagcgatactgttaaacttttttacacgcccataaaaataaattttgaaatttaatttggttgttttattgttacattacatgattg |
200 |
Q |
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| T |
11759633 |
tttaatttgtatataacgatactgtaaaacttttttacacgcgcataaaaataaattttaaaatttaatttggttgttttattgttacattacatgattg |
11759732 |
T |
|
| Q |
201 |
tcttcttctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11759733 |
tcttcttctcatccttattttaattaagagacaaaactatcataaaggaatgagcaaataatttttattgctaccatttttattttatgctatctataat |
11759832 |
T |
|
| Q |
301 |
cctcatct |
308 |
Q |
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|||||||| |
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| T |
11759833 |
cctcatct |
11759840 |
T |
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