View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18160_low_9 (Length: 238)
Name: NF18160_low_9
Description: NF18160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18160_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8676147 - 8676369
Alignment:
| Q |
1 |
tttgagaatgttagatattagaattggttcaccgttcctccaatagttttggaatttaaatagcttttttcctataaggtcacttgacattggacggtat |
100 |
Q |
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| T |
8676147 |
tttgagaatgttagatattagaattggttcaccgttcctccaatagttgtggaatttaaatagcttttttcctataaggtcacttgacattggacggtat |
8676246 |
T |
|
| Q |
101 |
atgtcattgtaattcttgcaactcgagattctttcttttcaacattcttttgtttttcaatattgcaaaaatgattcttcatacgacgagattttgttac |
200 |
Q |
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| T |
8676247 |
atgtcattgtaattcttgcaactcgagattctttcttttcaacattcttttgtttttcaatattgcaaaaatgattcttcatacgacgagattttgttac |
8676346 |
T |
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| Q |
201 |
cgattttgatatcctcccatctg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
8676347 |
cgattttgatatcctcccatctg |
8676369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 8721026 - 8721249
Alignment:
| Q |
1 |
tttgagaatgttagatattagaattggttcaccgttcctccaatagttttggaatttaaatagcttttttcctataaggtcacttgacattggacggtat |
100 |
Q |
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| T |
8721026 |
tttgagaacgtcagatattagaacgggttcaccattcctccaatacttttggaatttaaatagctttttttctataaggtcacttgacattggacagttt |
8721125 |
T |
|
| Q |
101 |
atgtcattgtaattcttgcaactcgagattctttcttt-tcaacattcttttgtttttcaatattgcaaaaatgattcttcatacgacgagattttgtta |
199 |
Q |
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| T |
8721126 |
atgtcatggcaattcttgcaacttgagattctttctttctcaacattcttttgtttttcaattttgcaaaaatgtttcttcataagacgggcttttgtta |
8721225 |
T |
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| Q |
200 |
ccgattttgatatcctcccatctg |
223 |
Q |
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|| |||| |||||||||||||||| |
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| T |
8721226 |
ccaatttagatatcctcccatctg |
8721249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 26 - 223
Target Start/End: Original strand, 8592851 - 8593049
Alignment:
| Q |
26 |
ggttcaccgttcctccaatagttttggaatttaaatagcttttttcctataaggtcacttgacattggacggtatatgtcattgtaattcttgcaactcg |
125 |
Q |
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| T |
8592851 |
ggttcaccattcctcaattttttttggaatttaaatagatttttatctataaggtcacttgacattggacactttatgtcatggcaattcatgcaacttg |
8592950 |
T |
|
| Q |
126 |
agattcttt-cttttcaacattcttttgtttttcaatattgcaaaaatgattcttcatacgacgagattttgttaccgattttgatatcctcccatctg |
223 |
Q |
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| T |
8592951 |
agattctttccttctcaacattcttttgtttttcaattttgcgaaaatgtttcttaacacgacgagcttttgttaccaatttagatatcgtctcatctg |
8593049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 23436929 - 23436727
Alignment:
| Q |
1 |
tttgagaatgttagatattagaattggttcaccgttcctccaatagttttggaatttaaatagcttttttcctataaggtcacttgacattggacggtat |
100 |
Q |
| |
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|||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
23436929 |
tttgagaacgttagatattagaacgggttcaccgttccgccaatacttttggaatttaaatagctttttttctataaggtcacttgacatcggacggtat |
23436830 |
T |
|
| Q |
101 |
atgtcattgtaattcttgcaactcgagattctttcttt-tcaacattcttttgtttttcaatattgcaaaaatgattcttcatacga-cgagattttgtt |
198 |
Q |
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||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||||||| |||| ||||||| |
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| T |
23436829 |
atgtcattgtaattcttgcaacttaagattctttctttctcaatattcttttgtttttcaattttgcaaaaatgtttcttcatacgaccgagcttttgtt |
23436730 |
T |
|
| Q |
199 |
acc |
201 |
Q |
| |
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||| |
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| T |
23436729 |
acc |
23436727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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