View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_1 (Length: 843)
Name: NF18161_high_1
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 777; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 777; E-Value: 0
Query Start/End: Original strand, 1 - 833
Target Start/End: Original strand, 35905665 - 35906497
Alignment:
| Q |
1 |
ctgatcttgaacataaatcacatagtccttataagtaggcactcctttaccgcctgtccaaccaataacatccgccccagtctgcgccgtttgattgttg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905665 |
ctgatcttgaacataaatcacataatccttataagtaggcactcctttactgcctgtccaaccaataacatccgccccagtctgcgccgtttgattgttg |
35905764 |
T |
|
| Q |
101 |
acaaagacattgaaaacaatttcattaactttagaataaaagtaatcacaaaaatgcaacctggttaagtacattgaattcggatcaacttgaaacatcc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905765 |
acaaagacattgaaaacaatctcattaactttagaataaaagtaatcacaaaaatgcaacctggttaagtacattgaattcggatcaacttgaaacatcc |
35905864 |
T |
|
| Q |
201 |
atgtgagattgtatcccatgttgacatctttattatttcccattgatcttgatgttgaataaacatcatgaggagcaatgtattgaggcatagtttgata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905865 |
atgtgagattgtatcccatgttgacatctttattatttcccattgatcttgacgttgaataaacatcatgaggagcaatgtattgaggcatagtttgata |
35905964 |
T |
|
| Q |
301 |
atcaattttaacatccttagcagcttgatttgtaataccggtggaagcaccgtaaagataaggcgtatcatcgtaccatgttcgactcaaaccggaatct |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35905965 |
atcaattttaacatccttagcagcttgatttgtaataccagtggaagcaccgtaaagataaggcgtatcatcgtaccatgttcgactcaaaccggaatct |
35906064 |
T |
|
| Q |
401 |
tgaactggagatataaattgcccaccaatatttaatctaaccattgtttgaaaatgcaaatttttagcatccatggtttgatcatcataaccgaccaacg |
500 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
35906065 |
tgaactggagatataaattgcccaccaacatttaatctaaacattgtttgaaaatgcaaatttttagcatccatggtttgatcatcataaccgaccaatg |
35906164 |
T |
|
| Q |
501 |
aaggtgaatcaaagaacaaatccggcatttgaataagttgaataccattaataaaagcaaaagcaccactgtgtttatcagaaggcttaaaagtaagatt |
600 |
Q |
| |
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|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
35906165 |
aaggtgaatctaacaacaaatccggcatttgaataagttgaataccattaataaaagcaaaagcaccattgtgtttatcagaaggcttaaaagtaagatt |
35906264 |
T |
|
| Q |
601 |
aagaacatttgaattcaaaggtgcaagtgaatattctctatcaagataagcttgagataaggcttgacatgtaatcgacgagctaaaattgttgagaagt |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
35906265 |
aagaacatttgaattcaaaggtgcaagtgaatattctctatcaagataagcttgagataaggcttgacatgtaatcgatgagctaaaattgttgagaagt |
35906364 |
T |
|
| Q |
701 |
gtaacaccatttgccgttacagaaaaatacgaatccgatgggttcaaattgttgtaaacagaaggataaaaatgtagtcttaaccaataacgtttatttg |
800 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35906365 |
gcaacaccatttgccgttacagaaaaatacgaatccgatgggttcaaattgttgtaaacagaaggataaaaatgtagtcttaaccaataacgtttatttg |
35906464 |
T |
|
| Q |
801 |
gcagaatagggaatttgtaggttgattctgatg |
833 |
Q |
| |
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| ||||||||||||||||||||||||||||||| |
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|
| T |
35906465 |
gtagaatagggaatttgtaggttgattctgatg |
35906497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 47623759 - 47623464
Alignment:
| Q |
5 |
tcttgaacataaatcacatagtccttataagtaggcactcctttaccgcctgtccaaccaataacatccgccccagtctgcgccgtttgattgttgacaa |
104 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||| | || |||||||| |||||||| ||||||| ||| || || ||| ||||| | || |||| || |
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| T |
47623759 |
tcttggacatataccacatagtcctggtaagttgtcatgcctttacctcctgtccacccaataatatcagcttgagcctgtgccgtattgttattgagaa |
47623660 |
T |
|
| Q |
105 |
agacattgaaaacaatttcattaactttagaataaaagtaatcacaaaaatgcaacctggttaagtacattgaattcggatcaacttgaaacatccatgt |
204 |
Q |
| |
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| | |||||||||||| ||||| || || |||||| || ||||||| ||||||||||| | |||||| ||||| ||||||||||| || | ||| || |
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| T |
47623659 |
atatattgaaaacaatctcattgaccttggaataatagaaatcacagaaatgcaacctcacgaggtacatggaatttggatcaacttggaaaacccacgt |
47623560 |
T |
|
| Q |
205 |
gagattgtatcccatgttgacatctttattatttcccattgatcttgatgttgaataaacatcatgaggagcaatgtattgaggcatagtttgata |
300 |
Q |
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||| ||||||||||||||||| || |||| | ||||||||||||||||| || || ||| | |||| |||||||| | |||||||| ||||| |
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| T |
47623559 |
gaggttgtatcccatgttgacgtccttatcggtacccattgatcttgatgtggagtagacagtaggaggtgcaatgtactttggcatagtctgata |
47623464 |
T |
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