View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_16 (Length: 427)
Name: NF18161_high_16
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 4 - 412
Target Start/End: Original strand, 37436637 - 37437045
Alignment:
| Q |
4 |
aatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccaagagtacaatatatgtactc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
37436637 |
aatatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccatgagtacaatatatgttctc |
37436736 |
T |
|
| Q |
104 |
ggtatgggtacttcacctttttacaagtcccatgctttagagattcaaactaaaccaaaatactaaaatttatctttcacaaaaatgcaagctttcgata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37436737 |
ggtatgggtacttcacctttttacaagtcccatgctttagaggttcaaactaaaccaaaatactaaaatttatctttcacaaaaatgctagctttcgata |
37436836 |
T |
|
| Q |
204 |
tttgttggaaaatgttcccttgttaattattcttttaggagaaacacagtgtgaaaattttctttaatgttgttgtttgtttgctaaattatgtattgta |
303 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37436837 |
tttgttggaaaatgttcacttgttaattattcttttaggagaaacacagtgtgaaaattttctttaatgttgttgtttgtttgctaaattatgtattgta |
37436936 |
T |
|
| Q |
304 |
taggttggagcgaataaacccagattgccctgttactaccttgccacaatgtaagcccactgataactgcctcgctaaggttataaaggtctcacgtgct |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37436937 |
taggttggagcgaataaacccagattgccctgttactaccttgccacaatgtaagcccactgataactgcctcgctaaggttataaaggtctcacgtgct |
37437036 |
T |
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| Q |
404 |
tagctaatt |
412 |
Q |
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| T |
37437037 |
tagctaatt |
37437045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 478073 - 478196
Alignment:
| Q |
6 |
tatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccaagagtacaatatatgtactcgg |
105 |
Q |
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|||||| ||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||| |||| ||| |||||| |||||| ||| ||||| ||| |
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| T |
478073 |
tatattatcatattaatatacaagagaaagtcacaattttcattcacagtagaataatgagc-aaaattgatgtaccacgagtaccgtatgtgtacccgg |
478171 |
T |
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| Q |
106 |
tatgggtacttcacctttttacaag |
130 |
Q |
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| T |
478172 |
tacgggtacttcacctttttacaag |
478196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 21979057 - 21979136
Alignment:
| Q |
10 |
ttgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccaagagtac |
90 |
Q |
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| T |
21979057 |
ttgtcatattaatacataagagaaagccacattttccactcacaatagaataatgagc-aaaaatggagtaccaaaagtac |
21979136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 22650312 - 22650369
Alignment:
| Q |
15 |
atattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaa |
72 |
Q |
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||||||||||| | ||||| || ||||||||||||||| |||||||||||||||||| |
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| T |
22650312 |
atattaatatataaaagaaaatcacaattttcactcataatagaataatgagcaaaaa |
22650369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 35812260 - 35812326
Alignment:
| Q |
6 |
tatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaa |
72 |
Q |
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||||||||||||||||| || | |||| || | ||||||| ||||| | |||||||||||||||||| |
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| T |
35812260 |
tatattgtcatattaatctataagagagagccacaatttttactcacaatagaataatgagcaaaaa |
35812326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 28080428 - 28080376
Alignment:
| Q |
29 |
gagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtacc |
82 |
Q |
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||||||||| ||||||||||||| | ||||||||||| | |||||||||||||| |
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| T |
28080428 |
gagaaagtcacaattttcactcacaatagaataatgaac-aaaaatgaagtacc |
28080376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 90
Target Start/End: Original strand, 16422494 - 16422577
Alignment:
| Q |
6 |
tatattgtcatattaatatacatgagaaagtcgcaattttcactcatagtagaataatgagcaaaaaatgaagtaccaagagtac |
90 |
Q |
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||||||||||||||| | || | ||||| ||| || ||||||||| | || ||||||||| |||||||||||||||| |||||| |
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| T |
16422494 |
tatattgtcatattagtgtataagagaatgtcataaatttcactcacaatacaataatgag-aaaaaatgaagtaccacgagtac |
16422577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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