View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_17 (Length: 424)
Name: NF18161_high_17
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Complemental strand, 41875734 - 41875343
Alignment:
| Q |
12 |
catcatcagaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaacctt |
111 |
Q |
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| T |
41875734 |
catcattagaagaaggtataaatatagcaccggtttcttgtcgtaatatatacgcaacttcatctcttgaccttatgttggcctcagaaaagttaacctt |
41875635 |
T |
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| Q |
112 |
accatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaat |
211 |
Q |
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| T |
41875634 |
accatcatacctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaat |
41875535 |
T |
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| Q |
212 |
gcagcagcatgatttccactgatttcagagaacaacattagaagagaataaattaactgaatcagatttgaaaaaataacttatgtaattattgcataaa |
311 |
Q |
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| T |
41875534 |
gcagcagcatgatttccactgatttcagagaacaacattagaagagaataaattaactgaatcagatttgaaaaaataacttatgtatttattgcataaa |
41875435 |
T |
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| Q |
312 |
acaaacctgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctcc |
403 |
Q |
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| T |
41875434 |
acaaacctgctgtgtgttataacacctttagaagcatcttcatctgtgagagagaaaacagcattgcaggcacctctaaatttaaaagctcc |
41875343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 406
Target Start/End: Original strand, 40868504 - 40868891
Alignment:
| Q |
27 |
gtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaaccttaccatcatacctctt |
126 |
Q |
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| T |
40868504 |
gtataaaaatagcaccagtttcttgccacactttattcgcagtttcctctcttgatcgcatattggcctcagaccagataacctgaccaccataccgctt |
40868603 |
T |
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| Q |
127 |
aacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagcatgattt |
226 |
Q |
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| T |
40868604 |
cacattctcaattttacatgttggcgcatttttaggaataacaatgtatgcagggatcccccgtagttttgctgccagagccaatgcagcagcatggttt |
40868703 |
T |
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| Q |
227 |
ccactgatttcagagaacaacattagaag-agaataaattaactgaatcagatttgaaaaaataa----cttatgtaat---tattgcataaaacaaacc |
318 |
Q |
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| T |
40868704 |
ccactgatttcagagaacaacgtcagaagaacaataaaattacaaaataagatttgaaaaaataatcagtttctggaattactactgcacataacaaacc |
40868803 |
T |
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| Q |
319 |
tgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctccact |
406 |
Q |
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| T |
40868804 |
tgctgtgtgttataacccctttagacgcatcttcatcattgagagagaaaacagcattgcatgcacctctaaatttaaaagctccact |
40868891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 403
Target Start/End: Original strand, 24818262 - 24818355
Alignment:
| Q |
310 |
aaacaaacctgctgtgtgttataacacctttagaagcatcttcatctgtaagagagaaaacagcattgcaggcacctctaaatttaaaagctcc |
403 |
Q |
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| T |
24818262 |
aaacacacctgctgtgtgtagttactcctttagaagcctcttcatcggtcagagagagaacagcgttgcatgcacccctaaatttaaaagctcc |
24818355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 24817970 - 24818185
Alignment:
| Q |
20 |
gaagaaggtataaatatagcaccggtttcttgtcgcaatatattcgcaacttcatctcttgaccgtatgttggcctcagaaaagttaaccttaccatcat |
119 |
Q |
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| T |
24817970 |
gaagaaggtatatagatagcacttgtttcttgcctcactttgttcataacttcttctcttgactgcatattatcctcagccaaattaacgtttccatcgt |
24818069 |
T |
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| Q |
120 |
acctcttaacattctcaagtttacaaattggcacattttttggagtaacaacgtatgcagggattccccttagttttgctgccaaagccaatgcagcagc |
219 |
Q |
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| T |
24818070 |
acctcttaatattttcaactttacaagatggtgcacttttcggaaccacaataaatgcagggatcccccttatctttgctgccaaagataatgcagcagc |
24818169 |
T |
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| Q |
220 |
atgatttccactgatt |
235 |
Q |
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| T |
24818170 |
atggttcccactgatt |
24818185 |
T |
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