View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_24 (Length: 361)
Name: NF18161_high_24
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 26791645 - 26792001
Alignment:
| Q |
2 |
tcggtagttaactgccgagaaaaaaggggaaccagctgcagttaactatcgaggaaaacataggtagttaattgctgaagagagctgaatcaatccc--- |
98 |
Q |
| |
|
|||||||||||||||||| |||||||| |||| |||||||||||||| |||| ||||| | || |||||| ||| |||||| |||||||||||||| |
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| T |
26791645 |
tcggtagttaactgccgaagaaaaagggaaaccggctgcagttaactaccgagaaaaacctcggcagttaactgccgaagagtgctgaatcaatcccact |
26791744 |
T |
|
| Q |
99 |
---acttaaccttgctccatttcacccaaatctcagacttacagtttcttgaattttccaaacttcatgcgacaacatcaattattttgatatttatatt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26791745 |
cccacttaaccttgctccatttcacccaaatctcagacctacagtttcttgaattttccaaacttcatgcgacaacatcaattcttttgatatttatatt |
26791844 |
T |
|
| Q |
196 |
tgattcaaatgaatcaaagatttgggtcttgtgttatgagtaatccaaggaaaagccatggcatgaattaaagtattggttgatttttgttatcttccag |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26791845 |
tgattcaaatgaatcaaagatttgggtcttgtgttatgagtaatccaacgaaaagccatggcatgaattaaagtattggttgatttttgttatctttcag |
26791944 |
T |
|
| Q |
296 |
atttaaatgtttcctgcttgggtttaacatgcttctcattctttcattcaattcatc |
352 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||| |
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|
| T |
26791945 |
atttaaatgtttcctgcttaggtttaacatccttctcattctttgattcaattcatc |
26792001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 46 - 352
Target Start/End: Complemental strand, 31242818 - 31242506
Alignment:
| Q |
46 |
actatcgaggaaaacataggtagttaattgctgaagagagctgaatcaatcccact------taaccttgctccatttcacccaaatctcagacttacag |
139 |
Q |
| |
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|||| |||||||||| | ||||||||| ||| |||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
31242818 |
actaccgaggaaaacctcggtagttaactgccgaagagtgctgaatcaatcccactcccacttaaccttgctccattttacccaaatctcagacctacag |
31242719 |
T |
|
| Q |
140 |
tttcttgaattttccaaacttcatgcgacaacatcaattattttgatatttatatttgattcaaatgaatcaaagatttgggtcttgtgttatgagtaat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31242718 |
tttcttgaattttccaaacttcatgcgacaacatcaattcttttgatatttatatttgattcaaatgaatcaaagatttgggtcttgtgttatgagtaat |
31242619 |
T |
|
| Q |
240 |
ccaaggaaaagccatggcatgaattaaagtattggttgatttttgttatcttccagatttaaatgtttcctgcttgggtttaacatgcttctcattcttt |
339 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31242618 |
ccaacgaaaagccatggcatgaattaaagtattggttgatttttgttatctttcagatttaaatgtttcctgcttgggtttaacatccttctcattcttt |
31242519 |
T |
|
| Q |
340 |
cattcaattcatc |
352 |
Q |
| |
|
|||||||||||| |
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|
| T |
31242518 |
gattcaattcatc |
31242506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 4786411 - 4786353
Alignment:
| Q |
2 |
tcggtagttaactgccgagaaaaaaggggaaccagctgcagttaactatcgaggaaaac |
60 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||||||||| ||||||||| |
|
|
| T |
4786411 |
tcggtagttaactaccgagaaaaaaatagaaccacctgcagttaactactgaggaaaac |
4786353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 37959768 - 37959727
Alignment:
| Q |
31 |
aaccagctgcagttaactatcgaggaaaacataggtagttaa |
72 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||||||| |
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|
| T |
37959768 |
aaccagctgcagttaactgccgaggaaaacatcggtagttaa |
37959727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 352
Target Start/End: Original strand, 43618569 - 43618925
Alignment:
| Q |
2 |
tcggtagttaactgccgagaaaaaaggggaaccagctgcagttaactatcgaggaaaacataggtagttaattgctgaagagagctgaatcaatccc--- |
98 |
Q |
| |
|
|||||||||||||||| | |||||||| |||| |||||||||||||| |||||||||| | || |||||| | | |||||| |||||||||||||| |
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|
| T |
43618569 |
tcggtagttaactgccaaagaaaaagggaaaccggctgcagttaactaccgaggaaaacctcggcagttaactaccgaagagtgctgaatcaatcccact |
43618668 |
T |
|
| Q |
99 |
---acttaaccttgctccatttcacccaaatctcagacttacagtttcttgaattttccaaacttcatgcgacaacatcaattattttgatatttatatt |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
43618669 |
cccacttaaccttgctccatttcacccaaatctcagacctacagtttcttgaattttccaaacttcatgcgacaacatcaattcttttgatatttatatt |
43618768 |
T |
|
| Q |
196 |
tgattcaaatgaatcaaagatttgggtcttgtgttatgagtaatccaaggaaaagccatggcatgaattaaagtattggttgatttttgttatcttccag |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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|
| T |
43618769 |
tgattcaaatgaatcaaagatttgggtcttgtgttatgagtaatccaacgaaaagccatggcatgaattaaagtattggttgatttttattatctttcag |
43618868 |
T |
|
| Q |
296 |
atttaaatgtttcctgcttgggtttaacatgcttctcattctttcattcaattcatc |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
43618869 |
atttaaatgtttcctgcttgggtttaacatccttctcattctttgattcaattcatc |
43618925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 31146403 - 31146439
Alignment:
| Q |
36 |
gctgcagttaactatcgaggaaaacataggtagttaa |
72 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
31146403 |
gctgcagttaactgtcgaggaaaacatcggtagttaa |
31146439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 46216428 - 46216464
Alignment:
| Q |
36 |
gctgcagttaactatcgaggaaaacataggtagttaa |
72 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
46216428 |
gctgcagttaactatcgaggaaaacttcggtagttaa |
46216464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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