View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_25 (Length: 359)
Name: NF18161_high_25
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 29838111 - 29837787
Alignment:
| Q |
18 |
acatcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatataccgtctt |
117 |
Q |
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| T |
29838111 |
acatcaaacaccggggtctagcacaagtggttggtgcgcatggtgtgtaaatggtttaaacatcgaggtactaacgaacaaacacaagatttaccgtctt |
29838012 |
T |
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| Q |
118 |
taactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcaaacgacacagatgcat |
217 |
Q |
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| T |
29838011 |
taactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatcacacgacaccgatgcat |
29837912 |
T |
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| Q |
218 |
caataaattacaacacaacttatatatcatagaataattttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattg |
317 |
Q |
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| T |
29837911 |
caataaattacaacacaacttatatatcatagaataattttacctttgctaaaaaactaaccatgttgagtaacactttttctttttgttcttgtaattg |
29837812 |
T |
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| Q |
318 |
taggtccttcttggctagccattac |
342 |
Q |
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| T |
29837811 |
taggtccttcttggctagccattac |
29837787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 273 - 342
Target Start/End: Original strand, 34628690 - 34628759
Alignment:
| Q |
273 |
actaaccatgttgagtaacactttttctttttgttcttgtaattgtaggtccttcttggctagccattac |
342 |
Q |
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| T |
34628690 |
actaaccatgttgagttgcactttttctttttgttcttgtaattgtaggaccttcttgaccagccattac |
34628759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 34628535 - 34628626
Alignment:
| Q |
109 |
taccgtctttaactaatcctagaagaaccggcaagtaatcttcaagagcctgaagaagattagcgagcgttgaaccacctgaagatgaaatc |
200 |
Q |
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|||| ||||| |||||||| | ||| ||||| ||||| |||||||||||||| ||||||| ||| || |||||||| ||||| ||||||||| |
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| T |
34628535 |
taccatctttgactaatcccaaaagtaccggtaagtagtcttcaagagcctgtagaagatcagccagtgttgaacctcctgaggatgaaatc |
34628626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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