View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_35 (Length: 315)
Name: NF18161_high_35
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_35 |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: scaffold0328 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 15524 - 15238
Alignment:
| Q |
18 |
agggatggcttatatatacatatggtgaatgatacttttgccttagatttagaatttcttgtcaaattcttgtgataagattatcattcatccagagcaa |
117 |
Q |
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| T |
15524 |
agggatggcttatatatacatatggtgaatgatacttttgccttagatttagaatttcttgtcaaattcttgtgataagattatcattcatccagagcaa |
15425 |
T |
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| Q |
118 |
acaattctagaaaggaaagatggcttcattttcagtggaagaattcattggaaatggaattttgaaagaactcttccaaaaattgttggaagaaggctgg |
217 |
Q |
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| T |
15424 |
acaattctagaaaggaaagatggcttcattttcagtggaagaattcattggaaatggaattttgaaagaactcttccaaaaattgttggaagaaggttgg |
15325 |
T |
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| Q |
218 |
gatgatgtaccaacactaaaggttatgggttcagaggacatggacttgctatacatgacacagaagcaaaaggttggtcatcatcat |
304 |
Q |
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| T |
15324 |
gatgatgtaccaacactaaaggttatgggttcagaggacatggacttgctatacatgacacagaagcaaaaggttggtcatcatcat |
15238 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 27338198 - 27338094
Alignment:
| Q |
141 |
cttcattttcagtggaagaattcattggaaatggaattttgaaagaactcttccaaaaattgttggaagaaggctgggatgatgtaccaacactaaaggt |
240 |
Q |
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| T |
27338198 |
cttcattttcaatagaagaatttataggaaatggagttttgaaggagctgctcccgaaattgttggatgaaggttgggatgatgtgccaacaatgaaggt |
27338099 |
T |
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| Q |
241 |
tatgg |
245 |
Q |
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| T |
27338098 |
tatgg |
27338094 |
T |
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