View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_39 (Length: 279)
Name: NF18161_high_39
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_39 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 7844458 - 7844205
Alignment:
| Q |
19 |
tgtatactatacacatatgtccactactaaagattctttatttagtgaccaattttccaaaccttaaatgtgtgtttgcaattattattgcagaagtttg |
118 |
Q |
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| T |
7844458 |
tgtatactatacacatatgtccactactaaaaattctttatttagtgaccaattttccaaaccttaaatgtgtgtttgcaattattattgcagaagtttg |
7844359 |
T |
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| Q |
119 |
gggttggaaaatgatgatgccactcaaaacatgaggcataaagctgaagaagagaccaatgccattgatgatgttgccaaacagtttgccgcagaaattt |
218 |
Q |
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| T |
7844358 |
gggttggaaaataatgatgccactcaaaacatgaggcataaagctgaagaagagaccaatgccattgatgatgttgccaaacagtttgccgcagaaattt |
7844259 |
T |
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| Q |
219 |
cccagtaatcttctctcttttcatcaatatataataactacacttttcttctct |
272 |
Q |
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| T |
7844258 |
cccagtaatcttctctcttttcatcaatatataataactacacttttcttctct |
7844205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 7843423 - 7843333
Alignment:
| Q |
78 |
aaccttaaatgtgtgtttgcaattattattgcagaagtttggggttggaaaatgatgatgccactcaaaacatgaggcataaagctgaaga |
168 |
Q |
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| T |
7843423 |
aaccttaaatgtgtgtttgcaattattgttgcagaagtttggggttagaaaatgatgattgcacccaaaacatgaagtataaagctgaaga |
7843333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 227
Target Start/End: Complemental strand, 7845588 - 7845522
Alignment:
| Q |
161 |
gctgaagaagagaccaatgccattgatgatgttgccaaacagtttgccgcagaaatttcccagtaat |
227 |
Q |
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| T |
7845588 |
gctgaagaagagaccaatgccaaagatgaggatgtcaaacagtttgctgcagaaatcttccagtaat |
7845522 |
T |
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