View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18161_high_47 (Length: 237)
Name: NF18161_high_47
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_47 |
 | |
|
| [»] scaffold0294 (2 HSPs) |
| | |
|
| [»] scaffold0813 (1 HSPs) |
| | |
|
| [»] scaffold0286 (1 HSPs) |
| | |
|
| [»] scaffold0552 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47987007 - 47986784
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47987007 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
47986908 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47986907 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
47986808 |
T |
|
| Q |
201 |
aggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47986807 |
aggattttcacgtgatgtgtttcc |
47986784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 47996294 - 47996071
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47996294 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
47996195 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47996194 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
47996095 |
T |
|
| Q |
201 |
aggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
47996094 |
aggattttcacgtgatgtgtttcc |
47996071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48005581 - 48005358
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48005581 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
48005482 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48005481 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
48005382 |
T |
|
| Q |
201 |
aggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48005381 |
aggattttcacgtgatgtgtttcc |
48005358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 48014866 - 48014643
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48014866 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
48014767 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48014766 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtcacctgtgcggctatga |
48014667 |
T |
|
| Q |
201 |
aggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
48014666 |
aggattttcacgtgatgtgtttcc |
48014643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 5383252 - 5383414
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| || || || |||||||| |||||||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
5383252 |
actgtgttagcctatgtagcctcccaagaagcatttataagttgaaatctctgaaaactctcattctttctggttgtttaaagattaccaagttggaaga |
5383351 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagt |
163 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
5383352 |
ggacatagaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagt |
5383414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 5344787 - 5344971
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || || || || ||||||||||||||||||||||| || |||||||||||| ||||||||||||| |
|
|
| T |
5344787 |
actgtattagcctatgtagcctgccaagaagcatctataagttgaattctctaaaaactctcattctttcgggttgtttaaagattgacaagttggaaga |
5344886 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
|||| | ||| |||||||||||||||| | | || | |||||||||||||| ||||||| ||| || || | |||||| |||||| |
|
|
| T |
5344887 |
ggacttagaacaaatgaaatctttaaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtca |
5344971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 185
Target Start/End: Complemental strand, 5128567 - 5128388
Alignment:
| Q |
6 |
attagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggaca |
105 |
Q |
| |
|
|||||||||||||||||||||||||||| || || || |||||| | |||||||||||||||||||| ||| ||| |||| ||||||||||||||||| |
|
|
| T |
5128567 |
attagcctatgtagcctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtataatgattgacaagttggaagaggact |
5128468 |
T |
|
| Q |
106 |
tggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
||||| ||||| |||| ||||| ||| || |||||||||||||||| |||| |||||| || || |||||||| |||||| |
|
|
| T |
5128467 |
tggaacaaatggaatcattaacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtca |
5128388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 5433963 - 5434141
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
|||||| ||||||||| |||||||||||||| ||| || || |||||| | ||||||||||| ||| ||||||||||||||||| |||| |||||||| | |
|
|
| T |
5433963 |
tgtattggcctatgtaacctcccaagaagcatatataagttgaaatctttgaaaactctcatccttactggctgtttaaagattgacaatttggaagatg |
5434062 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgag |
181 |
Q |
| |
|
|| ||||| | ||| |||||||||| ||| || |||||||||||||||| |||| |||||||||| | |||||| |||| |
|
|
| T |
5434063 |
acttggaacatatggaatctttaaccactctgcttgcaaataacactgcaataaaaagagtgcctctttcagtactgag |
5434141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 5182065 - 5181905
Alignment:
| Q |
18 |
agcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatga |
117 |
Q |
| |
|
||||| |||||||||| || || || ||||| |||| ||||||||||||||||| ||||||| |||| |||||||||||||||| ||||| |||||| |
|
|
| T |
5182065 |
agccttccaagaagcatctataatttgaaatcattaaacactctcattctttctgggtgtttaatgattgacaagttggaagaggatttggaacaaatga |
5181966 |
T |
|
| Q |
118 |
aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagt |
178 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
5181965 |
aatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagt |
5181905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 5257469 - 5257315
Alignment:
| Q |
21 |
ctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaat |
120 |
Q |
| |
|
||||||||||||| || || || ||||||||||||||| ||||||||||||| |||| || |||| ||||||||||||||||| | ||| | |||| || |
|
|
| T |
5257469 |
ctcccaagaagcatctataagttgaaatctctaaaaactttcattctttctgggtgttcaatgattgacaagttggaagaggacttagaacagatgacat |
5257370 |
T |
|
| Q |
121 |
ctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagt |
175 |
Q |
| |
|
||||||| ||| | |||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
5257369 |
ctttaaccactctaattgcaaataacactgcaataacaagagtgccattatcagt |
5257315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 5284542 - 5284361
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
||||||||| |||||||||||||| |||||| || || || ||||||||||||||| ||||||||| ||| |||| || |||| ||||||||||||||| |
|
|
| T |
5284542 |
tgtattagcttatgtagcctcccacgaagcatctataagttgaaatctctaaaaactttcattctttttgggtgttcaatgattgacaagttggaagagg |
5284443 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtc |
184 |
Q |
| |
|
|| | ||| | |||| ||||||||| ||| || | || |||||||| || |||||||||||||| || |||||||| ||||| |
|
|
| T |
5284442 |
acttagaacagatgacatctttaaccactctgatagctaataacaccgcaataacaagagtgcccttttcagtagtaaggtc |
5284361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 184
Target Start/End: Original strand, 5447515 - 5447696
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||| || || || |||||| | |||||||||||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
5447515 |
tgtattggcctaggtaacctcccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtttaaagattgacaagctggaagagg |
5447614 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtc |
184 |
Q |
| |
|
|| ||||| | ||| |||||||||| ||| || |||||||||| ||| | ||||||| |||||| || || ||||| ||||| |
|
|
| T |
5447615 |
acttggaacagatggaatctttaaccactctgcttgcaaataatacttcaataacaacagtgcccttttcggtagttaggtc |
5447696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 5176709 - 5176849
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||| | |||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||| |
|
|
| T |
5176709 |
aaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaata |
5176808 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
||||||| |||||||||||||| || ||| |||| |||||| |
|
|
| T |
5176809 |
acactgcaataacaagagtgcccttgtcaatagtaaggtca |
5176849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 166
Target Start/End: Complemental strand, 5690312 - 5690149
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
||||||||||| | || ||| |||||||||| || || || |||||||| ||||||||||||||||| || |||| || |||||||||||||||||||| |
|
|
| T |
5690312 |
tgtattagcctttctaaccttccaagaagcatctataagttgaaatctctgaaaactctcattctttccgggtgttcaatgattaacaagttggaagagg |
5690213 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcc |
166 |
Q |
| |
|
|| ||||| ||||| |||||||||| ||| || |||||||| |||||| |||||||| ||||| |
|
|
| T |
5690212 |
acttggaacaaatggaatctttaaccactctgcttgcaaatgacactggaataacaagtgtgcc |
5690149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 5278536 - 5278657
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||| | |||| ||||||||||||||||| ||||| ||||| |||||||||||||| || ||||||||| |
|
|
| T |
5278536 |
aaatctttgaaaacactcattctttctgggtgttcgatgattgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaata |
5278635 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcc |
166 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
5278636 |
acactgcaataacaagagtgcc |
5278657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 5447083 - 5447263
Alignment:
| Q |
1 |
actgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| || || || |||||| | ||||||||| |||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
5447083 |
actgcattagcctatgtagcctcccaaaaagcatctataagttgaaatctttgaaaactctcgttctttctggttgtttaaagattgacaaggtggaaga |
5447182 |
T |
|
| Q |
101 |
ggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgag |
181 |
Q |
| |
|
|||| | || ||||| |||||||||| ||| | |||||||||||||| | ||||||| | | || |||||| ||||||| |
|
|
| T |
5447183 |
ggacttcgagaaaatggaatctttaaccactcttcttgcaaataacacttcaataacaacaatacccttatcaatagtgag |
5447263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 184
Target Start/End: Complemental strand, 5074019 - 5073880
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||||||||||||||||||||||| || |||| || |||| ||||||||||||||||| | ||| | |||| ||||||||| ||| || | ||||||| |
|
|
| T |
5074019 |
aaatctctaaaaactctcattctttccgggtgttcaatgattgacaagttggaagaggacttagaacagatgacatctttaaccactctgatagcaaata |
5073920 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcctttatcagtagtgaggtc |
184 |
Q |
| |
|
|||| || |||||||||||||| || |||||||| ||||| |
|
|
| T |
5073919 |
acaccgcaataacaagagtgcccttttcagtagtaaggtc |
5073880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 5066843 - 5066665
Alignment:
| Q |
7 |
ttagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
||||||| ||| ||| |||||||||| || || || |||||||| |||||||||||||||||||| ||| ||| |||| ||||||| ||||||||||| |
|
|
| T |
5066843 |
ttagccttcgtaaccttccaagaagcatctataagttgaaatctcttaaaactctcattctttctgggtgtataatgattgacaagttagaagaggacat |
5066744 |
T |
|
| Q |
107 |
ggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
||| ||||| |||||||||| ||| || ||||| |||| ||||| |||| |||| | || || |||||||| |||||| |
|
|
| T |
5066743 |
agaacaaatggaatctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtca |
5066665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 5096640 - 5096818
Alignment:
| Q |
7 |
ttagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
||||||| ||||||| ||| |||||| || || || |||||||| |||||||||||||||||||| ||| ||| |||| || |||||||||||||||| |
|
|
| T |
5096640 |
ttagccttcgtagccttccaggaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacgagttggaagaggacat |
5096739 |
T |
|
| Q |
107 |
ggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
||| ||||| |||| ||||| | | || ||||||||||||||| |||| |||||| || || |||||||| |||||| |
|
|
| T |
5096740 |
agaacaaatggaatcattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtca |
5096818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 163
Target Start/End: Complemental strand, 5354753 - 5354607
Alignment:
| Q |
17 |
tagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatg |
116 |
Q |
| |
|
||||||||||||||||| ||||| || |||||| | |||||||||||||||||||| ||| |||| | ||||||||||||||||| ||||| || || |
|
|
| T |
5354753 |
tagcctcccaagaagcatctacaagttgaaatctttgaaaactctcattctttctggttgtaaaaagttagacaagttggaagaggacttggaacaattg |
5354654 |
T |
|
| Q |
117 |
aaatctttaactactttggttgcaaataacactgcgataacaagagt |
163 |
Q |
| |
|
|||||||||| || || |||||||| ||||||| ||||||||||| |
|
|
| T |
5354653 |
gaatctttaaccaccctgcttgcaaatgacactgcaataacaagagt |
5354607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 163
Target Start/End: Original strand, 5425880 - 5425998
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| ||| |||| ||||||||||||||||||| ||| ||||| |||||||||| ||| || ||||| ||| |
|
|
| T |
5425880 |
aaatctctgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatggaatctttaaccactctgattgcacata |
5425979 |
T |
|
| Q |
145 |
acactgcgataacaagagt |
163 |
Q |
| |
|
| ||||| |||| |||||| |
|
|
| T |
5425980 |
aaactgcaataaaaagagt |
5425998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 185
Target Start/End: Original strand, 5350364 - 5350504
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||| ||| |||| ||||||||||||||||||| ||| ||||| |||||||||| ||| || ||||| ||| |
|
|
| T |
5350364 |
aaatctctcaaaactctcattctttcagggtgtataatgattgacaagttggaagaggacatagaacaaatggaatctttaaccactctgcttgcacata |
5350463 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
| ||||| |||| |||| | || || |||||||| |||||| |
|
|
| T |
5350464 |
aaactgcaataaaaagaatacccttttcagtagtaaggtca |
5350504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 5102763 - 5102585
Alignment:
| Q |
7 |
ttagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
||||||| ||||||| |||||||||| || || || |||||| | |||| |||||||||||||| ||||||| |||| ||||||||||||| ||| | |
|
|
| T |
5102763 |
ttagccttcgtagccttccaagaagcatctataagttgaaatctttgaaaatactcattctttctgggtgtttaatgattgacaagttggaagacgactt |
5102664 |
T |
|
| Q |
107 |
ggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
|||| ||||| |||| ||||| ||| | | ||||| |||||||| ||||||| |||||| || |||||||| |||||| |
|
|
| T |
5102663 |
ggaacaaatggaatcattaaccactcttctagcaaacaacactgcaataacaacagtgcccttttcagtagtaaggtca |
5102585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 5179521 - 5179629
Alignment:
| Q |
55 |
aaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgat |
154 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||||||||||||||||||| ||||| ||||| |||| ||||| || || |||| ||| ||||||| || |
|
|
| T |
5179521 |
aaactctgattctttctgggtgttcaaagattaacaagttggaagaggacttggaagaaatggaatccttaacgaccctgattgctaatgacactgcaat |
5179620 |
T |
|
| Q |
155 |
aacaagagt |
163 |
Q |
| |
|
||| ||||| |
|
|
| T |
5179621 |
aactagagt |
5179629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 166
Target Start/End: Original strand, 5396920 - 5397041
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
||||| ||| ||||||| |||||||||| |||||| |||| |||| |||||||| || ||||| | ||| |||||||||| || ||||||||||||| |
|
|
| T |
5396920 |
aaatcactacaaactcttcttctttctgggtgtttactgattgacaaattggaagaagatttggaacagatggaatctttaaccaccttggttgcaaata |
5397019 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcc |
166 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
5397020 |
acactgcaataaaaagagtgcc |
5397041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 5281280 - 5281388
Alignment:
| Q |
55 |
aaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgat |
154 |
Q |
| |
|
||||||| ||||||||||| |||| || |||||||||||| ||||||||| ||||| ||||| |||| ||||| || || |||| ||| ||||||| || |
|
|
| T |
5281280 |
aaactctgattctttctgggtgttcaatgattaacaagttagaagaggacttggaacaaatggaatccttaacgaccctgattgctaatgacactgcaat |
5281379 |
T |
|
| Q |
155 |
aacaagagt |
163 |
Q |
| |
|
||||||||| |
|
|
| T |
5281380 |
aacaagagt |
5281388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 5157766 - 5157599
Alignment:
| Q |
18 |
agcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatga |
117 |
Q |
| |
|
||||| |||||||||| || || || |||||||| |||| | | |||||||| || ||| ||| |||| ||||||||||||||||||| ||| | ||| |
|
|
| T |
5157766 |
agccttccaagaagcatctataagttgaaatctctgaaaattttaattctttcagggtgtataatgattgacaagttggaagaggacatagaacagatgg |
5157667 |
T |
|
| Q |
118 |
aatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
|||||||||| ||| || ||||| | ||||||| |||| |||||| || || |||||||| |||||| |
|
|
| T |
5157666 |
aatctttaaccactctgcttgcacacgacactgcaataaaaagagtacccttttcagtagtaaggtca |
5157599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 5370503 - 5370674
Alignment:
| Q |
7 |
ttagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
||||||| ||| ||| |||||||||| || || || ||||||||||| ||||| |||||||| || ||| ||| |||| | |||||||||||||| || |
|
|
| T |
5370503 |
ttagccttcgtaaccttccaagaagcatttataagttgaaatctctaaagactcttattctttcagggtgtgtaatgattgagaagttggaagaggatat |
5370602 |
T |
|
| Q |
107 |
ggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagt |
178 |
Q |
| |
|
||| | ||| |||| ||||| ||| || |||||||||||||||| |||| ||| || || || |||||||| |
|
|
| T |
5370603 |
agaacagatggaatcattaaccactctgcttgcaaataacactgcaataaaaagggtacccttttcagtagt |
5370674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 5426043 - 5426079
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5426043 |
tgtgcggctatgaaggattttcacgtgatgtgtttcc |
5426079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 5350527 - 5350561
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgttt |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5350527 |
tgtgcggctatgaaggattttcacgtgatgtgttt |
5350561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 221
Target Start/End: Complemental strand, 5073856 - 5073823
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgtt |
221 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
5073856 |
tgtgcggctatgaaggattctcacgtgatgtgtt |
5073823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 5128366 - 5128329
Alignment:
| Q |
187 |
ctgtgcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
5128366 |
ctgtgcggccatgaaggattttcaagtgatgtgtttcc |
5128329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 5157573 - 5157540
Alignment:
| Q |
191 |
gcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
|
|
| T |
5157573 |
gcggctatgaaggattttctcgtgatgtgtttcc |
5157540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 5244005 - 5243913
Alignment:
| Q |
18 |
agcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaa |
110 |
Q |
| |
|
||||| |||||||||| || || || |||||||| |||||| ||||||| || || ||| ||| |||| | ||||||||||||||| ||||| |
|
|
| T |
5244005 |
agccttccaagaagcatctataagttgaaatctctgaaaactttcattctctcagggtgtataatgattgagaagttggaagaggacttggaa |
5243913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 5383459 - 5383495
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
5383459 |
tgtgcggccatgaaggattctcacgtgatgtgtttcc |
5383495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 4344574 - 4344756
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
||||||||||| |||| ||| ||||||| || || | || |||||||| |||||||||||||| ||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
4344574 |
tgtattagcctttgtaaccttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgtttaatgattgacaagttggaagagg |
4344673 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
|| ||||| ||||| |||||||||| ||| || |||||||||||||||| ||||||| ||| || || |||||||| |||||| |
|
|
| T |
4344674 |
acttggaacaaatggaatctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtca |
4344756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 185
Target Start/End: Complemental strand, 4124050 - 4123910
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||| |||| |||||||||||||||| ||||| ||||| |||||||||| ||| || ||||||||| |
|
|
| T |
4124050 |
aaatctctgaaaactctcattctatcgggatgtttaatgattgacaagttggaagaggagttggaacaaatggaatctttaaccactctgattgcaaata |
4123951 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
| ||||| ||||||| |||||| || || ||||| |||||| |
|
|
| T |
4123950 |
atactgctataacaaaagtgcccttttcggtagtaaggtca |
4123910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 48 - 178
Target Start/End: Original strand, 4335318 - 4335448
Alignment:
| Q |
48 |
tctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataaca |
147 |
Q |
| |
|
||||| |||||||||||||| || || |||||||||||| ||||||||||||||||| ||||| ||||| |||||||||| ||| | | ||| |||||| |
|
|
| T |
4335318 |
tctctgaaaactctcattctatcaggatgtttaaagattgacaagttggaagaggacttggaacaaatggaatctttaaccactctcatggcagataaca |
4335417 |
T |
|
| Q |
148 |
ctgcgataacaagagtgcctttatcagtagt |
178 |
Q |
| |
|
||| ||||||| |||||| || |||||||| |
|
|
| T |
4335418 |
ctggtataacaaaagtgcccttttcagtagt |
4335448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 45 - 159
Target Start/End: Original strand, 4361047 - 4361161
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||| || |||| ||| ||||||||||||| ||||| ||||| |||||||||| ||| || ||||||||| |
|
|
| T |
4361047 |
aaatctctgaaaactctcattctatctggatgttcaatgattgacacgttggaagaggacttggaacaaatggaatctttaaccactctgattgcaaata |
4361146 |
T |
|
| Q |
145 |
acactgcgataacaa |
159 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
4361147 |
acactggtataacaa |
4361161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 4320772 - 4320590
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
||||||||||| |||||||| ||||||| || || | || ||| |||| || ||||||||||| || || ||||||| |||| ||||||||||||||| |
|
|
| T |
4320772 |
tgtattagcctttgtagccttccaagaaacatctatacgttgaaaactctgaatactctcattctatcgggatgtttaatgattgacaagttggaagagg |
4320673 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
|| ||||| ||||| |||||||||| || || |||||||||| |||| ||||||| ||| || || ||| |||| |||||| |
|
|
| T |
4320672 |
acttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggtca |
4320590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 166
Target Start/End: Complemental strand, 7885493 - 7885381
Alignment:
| Q |
54 |
aaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcga |
153 |
Q |
| |
|
||||| |||||||| ||||| ||| ||| ||| ||||||| |||||||| || ||| |||||||||||||||| || |||||||| || ||||||| | |
|
|
| T |
7885493 |
aaaacactcattctgtctggatgtacaaaaattgacaagttagaagaggatatagaacaaatgaaatctttaaccaccttggttgcggatgacactgcta |
7885394 |
T |
|
| Q |
154 |
taacaagagtgcc |
166 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
7885393 |
tcacaagagtgcc |
7885381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 4133534 - 4133406
Alignment:
| Q |
45 |
aaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaata |
144 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||| ||| |||| ||||| ||||| ||||| ||||| | |||||||| ||| || ||| ||| |
|
|
| T |
4133534 |
aaatctctgaaaactcttattctttctggctgtttaattattgacaaattgga--aggacttggaacaaatggagtctttaaccactctgattgtggata |
4133437 |
T |
|
| Q |
145 |
acactgcgataacaagagtgcctttatcagt |
175 |
Q |
| |
|
||||||| ||||||| |||||| || ||||| |
|
|
| T |
4133436 |
acactgcaataacaaaagtgcccttttcagt |
4133406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 6651019 - 6651102
Alignment:
| Q |
27 |
agaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaa |
110 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| | ||||||||||| |||| |||||| |||| ||||| |||||| ||||| |
|
|
| T |
6651019 |
agaagcatatataaattaaaatctctagaaactttgattctttctggatgttccaagattgacaaattggaggaggacttggaa |
6651102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Complemental strand, 6498643 - 6498523
Alignment:
| Q |
39 |
aaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttg |
138 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||| |||| |||||| |||| ||||| |||||| ||||| | ||| |||| || || || ||| ||| |
|
|
| T |
6498643 |
aaattaaaatctctagaaactttgattctttctggatgttccaagattgacaaattggaggaggacgtggaacagatggaatcattgacaaccttgattg |
6498544 |
T |
|
| Q |
139 |
caaataacactgcgataacaa |
159 |
Q |
| |
|
| |||| ||||| ||||||| |
|
|
| T |
6498543 |
cggataagactgctataacaa |
6498523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 110
Target Start/End: Original strand, 6675666 - 6675738
Alignment:
| Q |
38 |
caaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaa |
110 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||||| |||| |||||| |||| ||||| |||||| ||||| |
|
|
| T |
6675666 |
caaattaaaatctctagaaactttgattctttctggatgttccaagattgacaaattggaggaggacgtggaa |
6675738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 110
Target Start/End: Complemental strand, 6545565 - 6545494
Alignment:
| Q |
39 |
aaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaa |
110 |
Q |
| |
|
||||||||||||||| ||||| | |||||||| || |||| ||||||||||| ||||| |||||| ||||| |
|
|
| T |
6545565 |
aaattaaaatctctagaaactttgattctttcgggatgttccaagattaacaaattggaggaggacttggaa |
6545494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 6752924 - 6753051
Alignment:
| Q |
39 |
aaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttg |
138 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||| |||| | |||| |||| ||||| |||||| ||||| | ||| |||| || | ||| ||| ||| |
|
|
| T |
6752924 |
aaattaaaatctctagaaactttgattctttctggatgttccatgattgacaaattggaggaggacttggaacagatggaatcattgattaccttgattg |
6753023 |
T |
|
| Q |
139 |
caaataacactgcgataacaagagtgcc |
166 |
Q |
| |
|
| |||| ||||| ||||||| |||||| |
|
|
| T |
6753024 |
cggataagactgctataacaaaagtgcc |
6753051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 6815419 - 6815570
Alignment:
| Q |
24 |
ccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctt |
123 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||| | ||||||||||| |||| | |||| | || ||||| |||||| ||||| | ||| |||||| |
|
|
| T |
6815419 |
ccaagaagcaactataaattaaaatctctagaaactttgattctttctggatgttccatgattgaaaaattggaggaggacttggaacagatggaatctt |
6815518 |
T |
|
| Q |
124 |
taactactttggttgcaaataacactgcgataacaagagtgcctttatcagt |
175 |
Q |
| |
|
| | ||| ||| |||| |||| ||||| |||| || |||||| || ||||| |
|
|
| T |
6815519 |
tgattaccttgattgctgataagactgctataaaaaaagtgccattttcagt |
6815570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 36213931 - 36213807
Alignment:
| Q |
54 |
aaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcga |
153 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||| | ||| |||||||||| || ||| |||||||||||||||| | |
|
|
| T |
36213931 |
aaaactctcattctttctggatgttcaaagattgacaaattggaagaggacatggaacagatggaatctttaaccaccttgattgcaaataacactgcaa |
36213832 |
T |
|
| Q |
154 |
taacaagagtgcctttatcagtagt |
178 |
Q |
| |
|
||||||||||||| || |||||||| |
|
|
| T |
36213831 |
taacaagagtgccattttcagtagt |
36213807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 34724690 - 34724625
Alignment:
| Q |
52 |
taaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatga |
117 |
Q |
| |
|
|||||||||||||| | ||||| ||| ||| ||| ||||||||||||||||||| ||| |||||| |
|
|
| T |
34724690 |
taaaaactctcattgtgtctggatgtacaaaaattgacaagttggaagaggacatagaacaaatga |
34724625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 18935369 - 18935477
Alignment:
| Q |
58 |
ctctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgcgataac |
157 |
Q |
| |
|
|||||||| | ||||| ||| ||| ||| ||||||||||||||||||| ||| | |||| |||||| || || ||||||| |||| ||||| |||| |
|
|
| T |
18935369 |
ctctcattttatctggatgtacaaaaattgacaagttggaagaggacatagaacagatgacatctttgaccaccctggttgcggataagactgctgtaac |
18935468 |
T |
|
| Q |
158 |
aagagtgcc |
166 |
Q |
| |
|
||||||||| |
|
|
| T |
18935469 |
aagagtgcc |
18935477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 36213777 - 36213741
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
36213777 |
tgtgcggctatgaaggattctcacatgatgtgtttcc |
36213741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 9049 - 8871
Alignment:
| Q |
7 |
ttagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
||||||| ||||||| |||||||||| || || || |||||||| |||||||||||||||||||| ||| ||| |||| ||||||||||||||||||| |
|
|
| T |
9049 |
ttagccttcgtagccttccaagaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacaagttggaagaggacat |
8950 |
T |
|
| Q |
107 |
ggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
||| | ||| |||||||||| ||| || ||||| |||||||||| ||||||||||||| || ||| |||| |||||| |
|
|
| T |
8949 |
agaacagatggaatctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtca |
8871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 8848 - 8812
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
8848 |
tgtgcggccatgaaggattctcacgtgatgtgtttcc |
8812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 3 - 185
Target Start/End: Original strand, 8877537 - 8877719
Alignment:
| Q |
3 |
tgtattagcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagagg |
102 |
Q |
| |
|
||||||||||| | ||||| |||||||| | |||||| || |||||||||||| |||||||||||||||| |||| || |||| |||||||||| |||| |
|
|
| T |
8877537 |
tgtattagccttcggagccttccaagaagtatatacaagttgaaatctctaaaatctctcattctttctgggtgttcaatgattgacaagttggaggagg |
8877636 |
T |
|
| Q |
103 |
acatggaataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcctttatcagtagtgaggtca |
185 |
Q |
| |
|
|| | ||| | |||||||||||||| ||| || |||||||||||||||| |||| |||||| || || ||| |||| |||||| |
|
|
| T |
8877637 |
acttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggtca |
8877719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 8877742 - 8877778
Alignment:
| Q |
188 |
tgtgcggctatgaaggattttcacgtgatgtgtttcc |
224 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8877742 |
tgtgcggctatgaaggattttcgcgtgatgtgtttcc |
8877778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 12599274 - 12599222
Alignment:
| Q |
54 |
aaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
|||||||| || |||||||| |||| |||||||| |||||||||||| ||||| |
|
|
| T |
12599274 |
aaaactcttatactttctggttgttcaaagattagcaagttggaagaagacat |
12599222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 166
Target Start/End: Complemental strand, 22584361 - 22584204
Alignment:
| Q |
9 |
agcctatgtagcctcccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatgg |
108 |
Q |
| |
|
||||| |||||||||||||||| || ||||| || |||||| | ||||||||||||||||||||||||| ||| || | ||||||||||||||| ||| |
|
|
| T |
22584361 |
agcctttgtagcctcccaagaaacatctacaagttgaaatctttgaaaactctcattctttctggctgttaaaaactttataagttggaagaggacttgg |
22584262 |
T |
|
| Q |
109 |
aataaatgaaatctttaactactttggttgcaaataacactgcgataacaagagtgcc |
166 |
Q |
| |
|
|| ||||| |||||||||| ||| || |||||||| | ||||| |||| || |||||| |
|
|
| T |
22584261 |
aacaaatggaatctttaaccactctgcttgcaaatgaaactgcaataaaaaaagtgcc |
22584204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 14767183 - 14767123
Alignment:
| Q |
40 |
aattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaaga |
100 |
Q |
| |
|
|||| |||||| | ||||||||||| ||||| ||||||| ||||||| |||| |||||||| |
|
|
| T |
14767183 |
aattgaaatctttgaaaactctcatcctttccggctgttcaaagattgacaaattggaaga |
14767123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0813 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0813
Description:
Target: scaffold0813; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 4955 - 4872
Alignment:
| Q |
27 |
agaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaa |
110 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| | ||||||||||| |||| |||||| |||| ||||| |||||| ||||| |
|
|
| T |
4955 |
agaagcatatataaattaaaatctctagaaactttgattctttctggatgttccaagattgacaaattggaggaggacttggaa |
4872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0286
Description:
Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 6611 - 6694
Alignment:
| Q |
27 |
agaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaa |
110 |
Q |
| |
|
||||||| ||| ||||||||||||||| ||||| | ||||||||||| |||| |||||| |||| ||||| |||||| ||||| |
|
|
| T |
6611 |
agaagcatatataaattaaaatctctagaaactttgattctttctggatgttccaagattgacaaattggaggaggacttggaa |
6694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 3375057 - 3375109
Alignment:
| Q |
54 |
aaaactctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
|||||||| || |||||||| |||| ||||||||||||||||||||| ||||| |
|
|
| T |
3375057 |
aaaactcttatactttctggttgttcaaagattaacaagttggaagaagacat |
3375109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 106
Target Start/End: Complemental strand, 3286734 - 3286685
Alignment:
| Q |
57 |
actctcattctttctggctgtttaaagattaacaagttggaagaggacat |
106 |
Q |
| |
|
|||||||| |||||||| |||| ||||||| ||||||||||||| ||||| |
|
|
| T |
3286734 |
actctcatcctttctggttgttcaaagattgacaagttggaagaagacat |
3286685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 8417 - 8266
Alignment:
| Q |
24 |
ccaagaagcacatacaaattaaaatctctaaaaactctcattctttctggctgtttaaagattaacaagttggaagaggacatggaataaatgaaatctt |
123 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||| | ||||||||||| |||| | |||| | || ||||| |||||| ||||| | ||| |||||| |
|
|
| T |
8417 |
ccaagaagcaactataaattaaaatctctagaaactttgattctttctggatgttccatgattgaaaaattggaggaggacttggaacagatggaatctt |
8318 |
T |
|
| Q |
124 |
taactactttggttgcaaataacactgcgataacaagagtgcctttatcagt |
175 |
Q |
| |
|
| | ||| ||| |||| |||| ||||| |||| || |||||| || ||||| |
|
|
| T |
8317 |
tgattaccttgattgctgataagactgctataaaaaaagtgccattttcagt |
8266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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