View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_48 (Length: 236)
Name: NF18161_high_48
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 29660959 - 29661175
Alignment:
| Q |
1 |
tgcagtcaagccctgtcttactcctctcaccaagcttgatgcatctttgcctccttattacaatccatcagcatatagaagacttgtgtgcagattacta |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29660959 |
tgcagccaagccctgtcttactcctctcaccaagcttgatgcatctttgcctccttattacaatccatcagcatatagaagacttgtgtgcagattacta |
29661058 |
T |
|
| Q |
101 |
tatcttaccaaaacttttcatgttatatgttttgtagttcaatttcttagccaattcatgtctgcttccactactctacactgtcaggctaactaaatcg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29661059 |
tatcttaccaaaacttttcatgttatatgttttgtagttcaatttcttagccaattcatgtctgcttccactactctacactgtcaggctaactaaatcg |
29661158 |
T |
|
| Q |
201 |
atcagtaaactaactat |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
29661159 |
atcagtaaactaactat |
29661175 |
T |
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