View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_49 (Length: 236)
Name: NF18161_high_49
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_49 |
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| [»] chr4 (9 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36984875 - 36984640
Alignment:
| Q |
1 |
atcaaagatttggaggctattgaggaaaaagagattcctgcaaccaaacaagtaacgcttcattcatatattcactcaaaatttgtaggctattgtccca |
100 |
Q |
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| T |
36984875 |
atcaaagatttggaggctattgaggaaaaagagattcctgcaaccaaacaagtaacgcttcattcatatattcactcaaaatttgtaggctattgaccca |
36984776 |
T |
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| Q |
101 |
aagnnnnnnnnnnnnnnnnnncaaccatagttttatgttgaaaatgttcaaaaaatgtgtattcttccaattatatcgggttggcttgcatgaagtattt |
200 |
Q |
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| T |
36984775 |
aagttttttttttctttttttcaaccatagttttatgttgaaaatgttcaaaaaatgtgtattcttccaattatatcgggttggcttgcatgaagtattt |
36984676 |
T |
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| Q |
201 |
agtctctatgctaatatttggaggtggaaggatatc |
236 |
Q |
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| T |
36984675 |
agtctctatgctaatatttggaggtggcaggatatc |
36984640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 36981098 - 36981025
Alignment:
| Q |
9 |
tttggaggctattgaggaaaaagagattcctgcaaccaaacaagtaacgcttcattcatatattcactcaaaat |
82 |
Q |
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| T |
36981098 |
tttggaagctattgagaaaaaagaaattcctgcaaccaagcaagtaaggcctcattcatatattcactcaaaat |
36981025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 150 - 235
Target Start/End: Complemental strand, 36985372 - 36985287
Alignment:
| Q |
150 |
aaaaaatgtgtattcttccaattatatcgggttggcttgcatgaagtatttagtctctatgctaatatttggaggtggaaggatat |
235 |
Q |
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| T |
36985372 |
aaaaaatgtgtattcttccaattataccgggtaggtttacatgaagtacttagtctctatgctattatttggatgttgcaggatat |
36985287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 36996996 - 36996931
Alignment:
| Q |
1 |
atcaaagatttggaggctattgaggaaaaagagattcctgcaaccaaacaagtaacgcttcattca |
66 |
Q |
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| T |
36996996 |
atcagagatttggaagctattgagaaaaaagaaattcctgcaaccaaacaagtaaggcttcattca |
36996931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 36980847 - 36980748
Alignment:
| Q |
134 |
tatgttgaaaatgttcaaaaaatgtgtattcttccaattatatcgggttggcttgcatgaagtatttagtctctatgctaatatttggaggtggaaggat |
233 |
Q |
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| T |
36980847 |
tatgttgaaaatgttcgaaaa-tgtttattgttccaattatattgggttg-cttgtatgaagtacttggtctctatgcttatatttggatgttgcaggat |
36980750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 36996724 - 36996675
Alignment:
| Q |
141 |
aaaatgttcaaaaaatgtgtattcttccaattatatcgggttggcttgca |
190 |
Q |
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| T |
36996724 |
aaaatgtttaagaaatgtgtattcttccaattatatcgggtcggcttgca |
36996675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 36986545 - 36986441
Alignment:
| Q |
134 |
tatgttgaaaatgttcaaaaa----atgtgtattcttccaattatatcgggttggcttgcatgaagtatttagtctctatgctaatatttggaggtggaa |
229 |
Q |
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| T |
36986545 |
tatgttgaaaatgttcaaaaacagtgtgagtattcctccgattatat-tggttggcttgcaggaagtacttggtctctatgctaatacttggatgttgca |
36986447 |
T |
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| Q |
230 |
ggatat |
235 |
Q |
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|||||| |
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| T |
36986446 |
ggatat |
36986441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36996144 - 36996069
Alignment:
| Q |
1 |
atcaaagatttggaggctattgaggaaaaagagattcctgcaaccaaacaagtaacgcttcattcatatattcact |
76 |
Q |
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||||| |||||||||||||||||| |||| || ||||| ||||| | |||||| ||||||| |||||||||||| |
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| T |
36996144 |
atcaaggatttggaggctattgagaaaaaggaatttccttcaaccgagaaagtaaggcttcatacatatattcact |
36996069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 36980251 - 36980185
Alignment:
| Q |
8 |
atttggaggctattgaggaaaaagagattcctgcaaccaaacaagtaacgcttcattcatatattca |
74 |
Q |
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| T |
36980251 |
atttggaggctattgataaaaaagaaatttctgtaaccaagcaagtaaggattaattcatatattca |
36980185 |
T |
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