View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_high_6 (Length: 555)
Name: NF18161_high_6
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 101 - 539
Target Start/End: Original strand, 38622875 - 38623314
Alignment:
| Q |
101 |
ttttggtttggtaactcctcgtacccacc-actcccatcaggcttcttgtttattcccccactcacttacacgctgaaacaagtagtaacaacaaaacaa |
199 |
Q |
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| T |
38622875 |
ttttggtttggtaactcctcgtacccacccactcccatcaggcttcttgtttattcccccactcacttacacgctgaaacaagtagtaacaacaaaacaa |
38622974 |
T |
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| Q |
200 |
ctccattaataaccaaccctgtcttcttatgtagtttggtttgaccaagttcacattggtgggccctccctagccaccacgtatctttgatgattgttta |
299 |
Q |
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| T |
38622975 |
ctccattaataaccaaccctgtcttcttatgtagtttggtttgaccaagttcacattggtgggccctccctagccaccacgtatctttgatgattgttta |
38623074 |
T |
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| Q |
300 |
cgttacgaaacaaacaacaccgaatttggcactgaaattgattactatttatctctacctatctatctagtttttggggttggtaaacatattggatcct |
399 |
Q |
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| T |
38623075 |
cgttacgaaacaaacaacaccgaatttggcactgaaattgattactatctatctctacctatctatctagtttttggggttggtaaacatattggatcct |
38623174 |
T |
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| Q |
400 |
tccaattttaaatcaaagttgatgtatatgtaatcaatacacaaactttacattagcttttgttgattcaaggatgagtattaattttcagtttttctct |
499 |
Q |
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| T |
38623175 |
tccaattttaaatcaaagttgatgtatatgtaatcaatacacaaactttacattagcttttgttgattcaaggatgagtattaattttcagtttttctct |
38623274 |
T |
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| Q |
500 |
catcatagcaatggattaacataaacaagaagaatgaaat |
539 |
Q |
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| T |
38623275 |
catcatagcaatggattaacataaacaagaagaatgaaat |
38623314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 38622825 - 38622868
Alignment:
| Q |
66 |
ccattaattgtgacattattattaagttagattagttttggttt |
109 |
Q |
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| T |
38622825 |
ccattaattgtgacattattattaagttagattagttttggttt |
38622868 |
T |
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