View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18161_low_1 (Length: 1379)

Name: NF18161_low_1
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18161_low_1
NF18161_low_1
[»] chr3 (23 HSPs)
chr3 (357-874)||(11427105-11427630)
chr3 (27-301)||(11427705-11427979)
chr3 (1212-1318)||(52130955-52131061)
chr3 (606-732)||(11430984-11431110)
chr3 (1099-1194)||(31688156-31688252)
chr3 (1099-1198)||(31896611-31896711)
chr3 (1099-1198)||(31912320-31912420)
chr3 (1099-1198)||(31945968-31946068)
chr3 (328-565)||(11431151-11431400)
chr3 (882-961)||(19766009-19766088)
chr3 (27-108)||(24996530-24996611)
chr3 (1220-1288)||(52311470-52311539)
chr3 (1229-1286)||(53689436-53689493)
chr3 (876-931)||(11394007-11394062)
chr3 (898-983)||(31687881-31687966)
chr3 (1032-1072)||(31688056-31688096)
chr3 (887-931)||(46233973-46234017)
chr3 (226-294)||(24996341-24996408)
chr3 (1032-1072)||(31896771-31896811)
chr3 (1032-1072)||(31912480-31912520)
chr3 (1131-1170)||(952782-952821)
chr3 (881-944)||(52130783-52130846)
chr3 (1070-1103)||(52131084-52131117)
[»] chr1 (14 HSPs)
chr1 (1029-1361)||(31770809-31771143)
chr1 (1029-1286)||(7607896-7608155)
chr1 (887-1005)||(31771310-31771428)
chr1 (887-1009)||(7608318-7608440)
chr1 (941-1034)||(7608224-7608317)
chr1 (941-1034)||(31771212-31771305)
chr1 (1261-1318)||(14184882-14184939)
chr1 (887-944)||(1721556-1721613)
chr1 (877-944)||(17726023-17726089)
chr1 (886-931)||(32440659-32440704)
chr1 (886-944)||(22368196-22368254)
chr1 (733-782)||(5878780-5878828)
chr1 (1189-1226)||(14184848-14184885)
chr1 (733-782)||(5874891-5874939)
[»] chr4 (6 HSPs)
chr4 (1189-1361)||(41810334-41810506)
chr4 (877-944)||(32651267-32651334)
chr4 (877-961)||(38467690-38467775)
chr4 (889-961)||(3649873-3649945)
chr4 (879-942)||(41810163-41810226)
chr4 (887-922)||(26720237-26720272)
[»] scaffold0003 (5 HSPs)
scaffold0003 (1070-1198)||(36664-36794)
scaffold0003 (1070-1189)||(42852-42976)
scaffold0003 (887-983)||(36966-37062)
scaffold0003 (882-922)||(43199-43239)
scaffold0003 (1032-1071)||(36837-36876)
[»] chr6 (4 HSPs)
chr6 (1070-1189)||(27444385-27444509)
chr6 (876-921)||(31444760-31444805)
chr6 (882-922)||(27444122-27444162)
chr6 (881-929)||(33054175-33054223)
[»] chr7 (6 HSPs)
chr7 (1220-1311)||(37362394-37362487)
chr7 (1226-1282)||(1971305-1971361)
chr7 (882-931)||(16262692-16262741)
chr7 (1229-1280)||(7841462-7841512)
chr7 (887-929)||(21820186-21820228)
chr7 (733-766)||(20431259-20431292)
[»] chr8 (4 HSPs)
chr8 (61-207)||(1086319-1086468)
chr8 (887-961)||(44663663-44663737)
chr8 (887-961)||(35348991-35349066)
chr8 (1237-1291)||(19962262-19962318)
[»] scaffold0152 (1 HSPs)
scaffold0152 (887-983)||(10195-10291)
[»] chr2 (5 HSPs)
chr2 (873-944)||(997806-997877)
chr2 (886-961)||(4453777-4453852)
chr2 (886-931)||(9208569-9208614)
chr2 (882-921)||(7161811-7161850)
chr2 (877-940)||(3625169-3625234)
[»] scaffold0014 (1 HSPs)
scaffold0014 (880-922)||(32608-32650)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 357 - 874
Target Start/End: Complemental strand, 11427630 - 11427105
Alignment:
Q  357 actcacataatatatattaccattagattcatagaatggatgtggctaaacagaacatgtgaatataacgattctaagtcgattgtcttacaagtcaata 456  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  11427630 actcacataatatatattaccattagattcatagaatggatgcggctaaacaaaacatgtgaatataacgattctaagtcgatcgtcttacaagtcaata 11427531  T
Q  457 gtgttcaaattttttctctttggtatcgcttccttgccaattcgatc--------caccattgtttaattacaggtatgtataccattccactaagcgtt 548  Q
    |||||||||  |||||||||||||||||||||||||| |||||||||        ||||||||||||||||||||||||||||| |||||||||||||||    
T  11427530 gtgttcaaagattttctctttggtatcgcttccttgctaattcgatcgatggatccaccattgtttaattacaggtatgtatacgattccactaagcgtt 11427431  T
Q  549 gcttctcctatttttcaaataattttgtaggaannnnnnnnnnnnnnnnnaatcttctgcttttgttggagctgcagtgaaacctttctcatgctttggt 648  Q
    |||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11427430 gcttctcctatttttcaaataattttgtaggaattttttaatttttttttaatcttctgcttttgttggagctgtagtgaaacctttctcatgctttggt 11427331  T
Q  649 tgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatgtaatttctttgattaacgtgttttctttgacaattaataatat 748  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  11427330 tgtggatgatcttttctctgtcctttctttcctcgttggcgaccgatgcttcgagtgtaatttctttgattaacgtgttttctttgacaattaataatat 11427231  T
Q  749 aaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaagctgattttagggagcatacatcattttcatagtatcaagatgcaaaa 848  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11427230 aaggtatgattcaatatttatctttgtgtgatgaccactaatttaatttgaaggtgattttagggagcatacatcattttcatggtatcaagatgcaaaa 11427131  T
Q  849 ctaattacattttgcaatcaggtaat 874  Q
    ||||||| ||||||||||||||||||    
T  11427130 ctaattatattttgcaatcaggtaat 11427105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 27 - 301
Target Start/End: Complemental strand, 11427979 - 11427705
Alignment:
Q  27 agctagggatttctaatcacggagaaatcggaggcgatgacaaggatgtgggaggagatcgaccttttgggaaatccatcaataacgacgatggcgtcga 126  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11427979 agctagggattcctaatcacggagaaatcggaggcgatggcaaggatgtgggaggagatcgaccttttgggaaatccatcaataacgacgatggtgtcga 11427880  T
Q  127 agagaatggcagaggaaacaacttcgccgagagaaaatagaacaaaggtgagcgaaagaggagctgagagagagaaagaatgaacaattannnnnnnnng 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||          |    
T  11427879 agagaatggcagaggaaacaacttcgccgagagaaaatagaacaaaggtgagagaaagacgagctgagagagagaaagaatgaacaattttttttttttg 11427780  T
Q  227 gtatgacatggattatgccaaaatttttattattaattgtggcacacaatggtggtagatgagtggtactgccat 301  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11427779 gtatgacatggattatgccaaattttttatcattaattgtggcacacaatggtggtagatgagtggtactgccat 11427705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 1212 - 1318
Target Start/End: Original strand, 52130955 - 52131061
Alignment:
Q  1212 atcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaa 1311  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52130955 atcacacctctccattattgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcatcaa 52131054  T
Q  1312 atgagaa 1318  Q
    |||||||    
T  52131055 atgagaa 52131061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 606 - 732
Target Start/End: Complemental strand, 11431110 - 11430984
Alignment:
Q  606 tgcttttgttggagctgcagtgaaacctttctcatgctttggttgtggatgatcttttctctgtcctttctttcctcgttggcgactgatgcttccaatg 705  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||  |||||||| | ||    
T  11431110 tgcttttgttggaactgcagtaaaacctttctcatgcttttgttgtggatgatcttttctctgtcctttgtttcgtggttggcgatcgatgcttcgagtg 11431011  T
Q  706 taatttctttgattaacgtgttttctt 732  Q
    |||||| ||||||||||||||||||||    
T  11431010 taatttatttgattaacgtgttttctt 11430984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1099 - 1194
Target Start/End: Original strand, 31688156 - 31688252
Alignment:
Q  1099 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 1194  Q
    ||||||||| |||||||||||||||  |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31688156 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtc 31688252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1099 - 1198
Target Start/End: Complemental strand, 31896711 - 31896611
Alignment:
Q  1099 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 1196  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31896711 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31896613  T
Q  1197 aa 1198  Q
    ||    
T  31896612 aa 31896611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1099 - 1198
Target Start/End: Complemental strand, 31912420 - 31912320
Alignment:
Q  1099 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 1196  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31912420 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31912322  T
Q  1197 aa 1198  Q
    ||    
T  31912321 aa 31912320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 2e-31
Query Start/End: Original strand, 1099 - 1198
Target Start/End: Complemental strand, 31946068 - 31945968
Alignment:
Q  1099 attcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 1196  Q
    ||||||||| |||||||||||||||  |||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31946068 attcctcatcttcttcaaaaacacacaaaatccctt-ttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcgg 31945970  T
Q  1197 aa 1198  Q
    ||    
T  31945969 aa 31945968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 328 - 565
Target Start/End: Complemental strand, 11431400 - 11431151
Alignment:
Q  328 tatttgaaaccctagaataacaccgacctactcacataatatatattaccattagattcatagaatggatgtggctaaacagaacatgtgaatataacga 427  Q
    ||||||||||||| |||||||||| || |||||||  | |||||||||  |||| ||||||| |||||||| || |||||| ||||||||||||| | ||    
T  11431400 tatttgaaaccctggaataacaccaacatactcactcagtatatattaagattacattcataaaatggatgcggttaaacaaaacatgtgaatat-agga 11431302  T
Q  428 ttcta-agtc---gattgtcttacaagtcaatagtgttcaaattttttctctttggtatcgcttcc-ttgccaattc--------gatccaccattgttt 514  Q
    ||||| | ||   | | || ||| || ||||||| ||||||| || |||||||||  || |||||| ||||||||||        ||||||||||| |||    
T  11431301 ttctatattcaaagttcgttttagaactcaatagggttcaaagttcttctctttgccatagcttcctttgccaattcgatcgatggatccaccattcttt 11431202  T
Q  515 aattacaggtatgtataccattccactaagcgttgcttctcctatttttca 565  Q
    || |||||||||| |||  ||||||||| ||| ||||||||||||||||||    
T  11431201 aactacaggtatgcatatgattccactatgcgctgcttctcctatttttca 11431151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 882 - 961
Target Start/End: Original strand, 19766009 - 19766088
Alignment:
Q  882 atctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 961  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| || || ||||||| |||||    
T  19766009 atctaatctaacttatttctaatcctagttaacactccaattaacactccaaaccctaatcctacttttttaggcgccaa 19766088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 24996611 - 24996530
Alignment:
Q  27 agctagggatttctaatcacggagaaatcggaggcgatgacaaggatgtgggaggagatcgaccttttgggaaatccatcaa 108  Q
    ||||||||||| |||||| |||||||||||    |||||||||||||||||||||||||||||||||   ||||||||||||    
T  24996611 agctagggattcctaatcgcggagaaatcgacaacgatgacaaggatgtgggaggagatcgacctttcaagaaatccatcaa 24996530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1220 - 1288
Target Start/End: Complemental strand, 52311539 - 52311470
Alignment:
Q  1220 tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt 1288  Q
    ||||||||||| |||||||||| ||||||||||||||| |||||||| | ||||||||||||||||||||    
T  52311539 tctccattatttgttcaataccgatgcaaactctacagagccccatgttgccctcttcttctccctctgt 52311470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 1229 - 1286
Target Start/End: Original strand, 53689436 - 53689493
Alignment:
Q  1229 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct 1286  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  53689436 ttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttcttcctct 53689493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 876 - 931
Target Start/End: Original strand, 11394007 - 11394062
Alignment:
Q  876 tatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcc 931  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| || ||||||    
T  11394007 tatctaatctaatctaacttatttctaatcctagttaacactccaattatcactcc 11394062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 898 - 983
Target Start/End: Original strand, 31687881 - 31687966
Alignment:
Q  898 tcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 983  Q
    ||||| |||||||||||||||||| | ||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  31687881 tcctagtcctagttaacactccaacttacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 31687966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1032 - 1072
Target Start/End: Original strand, 31688056 - 31688096
Alignment:
Q  1032 attgtaaatgacaaataattaatgttattggtttccaataa 1072  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31688056 attgtaaatgacaaataattaatgttatcggtttccaataa 31688096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 887 - 931
Target Start/End: Complemental strand, 46234017 - 46233973
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcc 931  Q
    ||||||||||||||||||||||||||||||||||| || ||||||    
T  46234017 atctaacttattcctaatcctagttaacactccaattatcactcc 46233973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 294
Target Start/End: Complemental strand, 24996408 - 24996341
Alignment:
Q  226 ggtatgacatggattatgccaaaatttttattattaattgtggcacacaatggtggtagatgagtggta 294  Q
    ||||| ||||||||||||||||  ||||| ||||||||| || ||||||| |||||||||||| |||||    
T  24996408 ggtatcacatggattatgccaattttttt-ttattaattatgccacacaagggtggtagatgaatggta 24996341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1032 - 1072
Target Start/End: Complemental strand, 31896811 - 31896771
Alignment:
Q  1032 attgtaaatgacaaataattaatgttattggtttccaataa 1072  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31896811 attgtaaatgacaaataattaatgttatcgatttccaataa 31896771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 1032 - 1072
Target Start/End: Complemental strand, 31912520 - 31912480
Alignment:
Q  1032 attgtaaatgacaaataattaatgttattggtttccaataa 1072  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  31912520 attgtaaatgacaaataattaatgttatcgatttccaataa 31912480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1131 - 1170
Target Start/End: Complemental strand, 952821 - 952782
Alignment:
Q  1131 ttcttcttcttctgccttcatttcgaccctctaaagtaaa 1170  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  952821 ttcttcttcttctgccttcatttcaatcctctaaagtaaa 952782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 881 - 944
Target Start/End: Original strand, 52130783 - 52130846
Alignment:
Q  881 aatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 944  Q
    |||||| ||||||||||| |||||||||| ||||||||||| || ||||   ||||||||||||    
T  52130783 aatctagtctaacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattct 52130846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 1070 - 1103
Target Start/End: Original strand, 52131084 - 52131117
Alignment:
Q  1070 taaccctcctttctctccatctctctacgattcc 1103  Q
    |||||||||| |||||||||||||||||||||||    
T  52131084 taaccctcctctctctccatctctctacgattcc 52131117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 304; Significance: 1e-170; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 1029 - 1361
Target Start/End: Complemental strand, 31771143 - 31770809
Alignment:
Q  1029 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 1126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||  |||    
T  31771143 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctcttcatctctctacgattcctcatcttcttcaaaaacacacaaaa 31771044  T
Q  1127 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctccat 1226  Q
    || ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31771043 tcatttcttcttcttctgccttcatttcgaccttctaaagtaaatgcatcatcgttgaccaccgcgttggaaaactgatgttattatcacacctctccat 31770944  T
Q  1227 tattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaatgagaagtattgta 1326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31770943 tattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaatgagaagtattgta 31770844  T
Q  1327 gatatattgctttcctaccatgctttgacgggtat 1361  Q
    |||||||||||||||||||||||||||||||||||    
T  31770843 gatatattgctttcctaccatgctttgacgggtat 31770809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1029 - 1286
Target Start/End: Complemental strand, 7608155 - 7607896
Alignment:
Q  1029 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaa 1126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||    
T  7608155 tgtattgtaaatgacaaataattaatgttattggtttccaataaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaa 7608056  T
Q  1127 tcctttcttcttcttctgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgcgtcggaaaactgatgttattatcacacctctccat 1226  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  7608055 tcctttcttcttcttttgccttcatttcgaccctctaaagtaaatgcatcatcgttgaccaccgtgtcggaaaactgctgttattatcacacctctccat 7607956  T
Q  1227 tattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct 1286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7607955 tattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctct 7607896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 6e-53
Query Start/End: Original strand, 887 - 1005
Target Start/End: Complemental strand, 31771428 - 31771310
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 986  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  31771428 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaacctcagcccttggatctaatc 31771329  T
Q  987 tgtttgccattttttcctc 1005  Q
    ||||||| |||||||||||    
T  31771328 tgtttgcaattttttcctc 31771310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 887 - 1009
Target Start/End: Complemental strand, 7608440 - 7608318
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaacaaacctcagcccttggatctaatc 986  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||    
T  7608440 atctaacttattcctaatcctagttaaaactccaaataacactcccaaccctaattctcctgttttaggcgccaacaaatctcagcccttggatctaatc 7608341  T
Q  987 tgtttgccattttttcctccttt 1009  Q
    ||||||| |||||||||||||||    
T  7608340 tgtttgcaattttttcctccttt 7608318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 941 - 1034
Target Start/End: Complemental strand, 7608317 - 7608224
Alignment:
Q  941 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 1034  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7608317 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 7608224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 5e-38
Query Start/End: Original strand, 941 - 1034
Target Start/End: Complemental strand, 31771305 - 31771212
Alignment:
Q  941 ttctcctattttaggtgccaacaaacctcagcccttggatctaatctgtttgccattttttcctcctttcttacgtgacaaaattaattgtatt 1034  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31771305 ttctcctgttttaggcgccaacaaacctcagcccttggatctaatctgtttgccagtttttcctcctttcttacgtgacaaaattaattgtatt 31771212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1261 - 1318
Target Start/End: Original strand, 14184882 - 14184939
Alignment:
Q  1261 ccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaatgagaa 1318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14184882 ccatgcttccctcttcttctccctctgtcacttttgattatacatcttcaaattagaa 14184939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 887 - 944
Target Start/End: Original strand, 1721556 - 1721613
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 944  Q
    |||||||||||||||||||||| |||||||||||| |||| || ||||||||||||||    
T  1721556 atctaacttattcctaatcctaattaacactccaattaacgctgccaaccctaattct 1721613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 877 - 944
Target Start/End: Original strand, 17726023 - 17726089
Alignment:
Q  877 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 944  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  17726023 atctaatctaatctaa-ttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 17726089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 886 - 931
Target Start/End: Complemental strand, 32440704 - 32440659
Alignment:
Q  886 aatctaacttattcctaatcctagttaacactccaaataacactcc 931  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  32440704 aatctaacttattcctaatcctagttaacactccaattatcactcc 32440659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 886 - 944
Target Start/End: Complemental strand, 22368254 - 22368196
Alignment:
Q  886 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 944  Q
    |||||||||||||||||||||||||||||||| ||| || ||||   ||||||||||||    
T  22368254 aatctaacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattct 22368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 733 - 782
Target Start/End: Complemental strand, 5878828 - 5878780
Alignment:
Q  733 tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga 782  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||    
T  5878828 tgacaattgaaaatataaggtatgattcaatatttat-tttgtgtgatga 5878780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1189 - 1226
Target Start/End: Original strand, 14184848 - 14184885
Alignment:
Q  1189 cgcgtcggaaaactgatgttattatcacacctctccat 1226  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  14184848 cgcgtaggaaaactgatgttattatcacacctctccat 14184885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 733 - 782
Target Start/End: Complemental strand, 5874939 - 5874891
Alignment:
Q  733 tgacaattaataatataaggtatgattcaatatttatctttgtgtgatga 782  Q
    |||||||| | ||||||||||||||||||||||||||  |||||||||||    
T  5874939 tgacaattgacaatataaggtatgattcaatatttat-gttgtgtgatga 5874891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 169; Significance: 6e-90; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 6e-90
Query Start/End: Original strand, 1189 - 1361
Target Start/End: Original strand, 41810334 - 41810506
Alignment:
Q  1189 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt 1288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41810334 cgcgtcggaaaactgatgttattatcacacctctccattattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgt 41810433  T
Q  1289 cacttttgattatacatcttcaaatgagaagtattgtagatatattgctttcctaccatgctttgacgggtat 1361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41810434 cacttttgattatacatcttcaaatgagaagtattgtagatatattgctttactaccatgctttgacgggtat 41810506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 877 - 944
Target Start/End: Complemental strand, 32651334 - 32651267
Alignment:
Q  877 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 944  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||    
T  32651334 atctaatctaatctaacttattcctaatcctagttaacactccaattatcacttaaaaccctaattct 32651267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 877 - 961
Target Start/End: Complemental strand, 38467775 - 38467690
Alignment:
Q  877 atctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 961  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| |||||||   |||||||||||| | ||||||||| |||||    
T  38467775 atctaatctaatctaacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaa 38467690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 889 - 961
Target Start/End: Original strand, 3649873 - 3649945
Alignment:
Q  889 ctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 961  Q
    ||||||||||||||||||||||||||||||||| |||||||   |||||||| ||| || ||||||| |||||    
T  3649873 ctaacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatctacttttttaggcgccaa 3649945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 879 - 942
Target Start/End: Original strand, 41810163 - 41810226
Alignment:
Q  879 ctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaatt 942  Q
    |||||||||||||||||||| |||||||||||||||||||||| || ||||   ||||||||||    
T  41810163 ctaatctaatctaacttatttctaatcctagttaacactccaattaccacttaaaaccctaatt 41810226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 922
Target Start/End: Original strand, 26720237 - 26720272
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaa 922  Q
    ||||||||||||||||||||||||||||||||||||    
T  26720237 atctaacttattcctaatcctagttaacactccaaa 26720272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 100; Significance: 8e-49; HSPs: 5)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 100; E-Value: 8e-49
Query Start/End: Original strand, 1070 - 1198
Target Start/End: Complemental strand, 36794 - 36664
Alignment:
Q  1070 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttctgccttcatttcgaccctctaaagt 1167  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| || ||||||||||||||||||||||||||||||||||    
T  36794 taaccctcctttctctccatctctctacgattcctcatcttcttcaaaaacacacaaaatccctttttcttcttctgccttcatttcgaccctctaaagt 36695  T
Q  1168 aaatgcatcatcgttgaccaccgcgtcggaa 1198  Q
    ||||||||||||||||| |||||||| ||||    
T  36694 aaatgcatcatcgttgatcaccgcgttggaa 36664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 1070 - 1189
Target Start/End: Complemental strand, 42976 - 42852
Alignment:
Q  1070 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttcttcttcttct---gccttcatttcgaccctctaa 1164  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| |||||||||||||   |||||||||||||||||||||    
T  42976 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 42877  T
Q  1165 agtaaatgcatcatcgttgaccacc 1189  Q
    |||||||||||||||||||||||||    
T  42876 agtaaatgcatcatcgttgaccacc 42852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 887 - 983
Target Start/End: Complemental strand, 37062 - 36966
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 983  Q
    |||||||||||||||||||||| |||||||||||| ||||||| | || ||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  37062 atctaacttattcctaatcctaattaacactccaattaacacttcaaatcctaattcttcttttttaggcgccaaacaatcct-agcccttggatcta 36966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 882 - 922
Target Start/End: Complemental strand, 43239 - 43199
Alignment:
Q  882 atctaatctaacttattcctaatcctagttaacactccaaa 922  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43239 atctaatctaacttattcctaatcgtagttaacactccaaa 43199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1032 - 1071
Target Start/End: Complemental strand, 36876 - 36837
Alignment:
Q  1032 attgtaaatgacaaataattaatgttattggtttccaata 1071  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  36876 attgtaaatgacaaataattaatgttatcggtttccaata 36837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 1e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 1070 - 1189
Target Start/End: Original strand, 27444385 - 27444509
Alignment:
Q  1070 taaccctcctttctctccatctctctacgattcctcattttcttcaaaaacaca--aaatcctttct---tcttcttctgccttcatttcgaccctctaa 1164  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||||||  |||||| ||||   ||||||||||||||||||||||||||||||    
T  27444385 taaccctcctttctctccatctctctacgattcctcgtcttcttcaaaaacacacaaaatcccttcttcttcttcttctgccttcatttcgaccctctaa 27444484  T
Q  1165 agtaaatgcatcatcgttgaccacc 1189  Q
    |||||||||||||||||||||||||    
T  27444485 agtaaatgcatcatcgttgaccacc 27444509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 876 - 921
Target Start/End: Original strand, 31444760 - 31444805
Alignment:
Q  876 tatctaatctaatctaacttattcctaatcctagttaacactccaa 921  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  31444760 tatctaatctaatctaacttattcctaatcctagttaacactccaa 31444805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 882 - 922
Target Start/End: Original strand, 27444122 - 27444162
Alignment:
Q  882 atctaatctaacttattcctaatcctagttaacactccaaa 922  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  27444122 atctaatctaacttattcctaatcgtagttaacactccaaa 27444162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 881 - 929
Target Start/End: Complemental strand, 33054223 - 33054175
Alignment:
Q  881 aatctaatctaacttattcctaatcctagttaacactccaaataacact 929  Q
    |||||||||||||||||||||||||||| |||||||| ||| |||||||    
T  33054223 aatctaatctaacttattcctaatcctaattaacactacaattaacact 33054175  T

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Target: chr7 (Bit Score: 62; Significance: 4e-26; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 4e-26
Query Start/End: Original strand, 1220 - 1311
Target Start/End: Complemental strand, 37362487 - 37362394
Alignment:
Q  1220 tctccattatt-gttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgattatacatcttcaa 1311  Q
    ||||||||||| |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  37362487 tctccattatttgttcaatactgatgcaaactctacagagccccatgcttccctcttcttctccctctgtcacattttgattaaacatcttcaa 37362394  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1226 - 1282
Target Start/End: Original strand, 1971305 - 1971361
Alignment:
Q  1226 ttattgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctcc 1282  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  1971305 ttattgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctcc 1971361  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 882 - 931
Target Start/End: Complemental strand, 16262741 - 16262692
Alignment:
Q  882 atctaatctaacttattcctaatcctagttaacactccaaataacactcc 931  Q
    |||||||||||||||||||||||||||||||||||| ||| || ||||||    
T  16262741 atctaatctaacttattcctaatcctagttaacacttcaattatcactcc 16262692  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1229 - 1280
Target Start/End: Original strand, 7841462 - 7841512
Alignment:
Q  1229 ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttct 1280  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||    
T  7841462 ttgttcaatacc-atgcaaactctacagaaccccatgcttccctcttcttct 7841512  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 887 - 929
Target Start/End: Complemental strand, 21820228 - 21820186
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacact 929  Q
    |||||||||||||||||||||| |||||||||||| |||||||    
T  21820228 atctaacttattcctaatcctaattaacactccaattaacact 21820186  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000005
Query Start/End: Original strand, 733 - 766
Target Start/End: Complemental strand, 20431292 - 20431259
Alignment:
Q  733 tgacaattaataatataaggtatgattcaatatt 766  Q
    |||||||||| |||||||||||||||||||||||    
T  20431292 tgacaattaacaatataaggtatgattcaatatt 20431259  T

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Target: chr8 (Bit Score: 58; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 1e-23
Query Start/End: Original strand, 61 - 207
Target Start/End: Original strand, 1086319 - 1086468
Alignment:
Q  61 cgatgacaaggatgtgggaggagatcgaccttttgggaaatccatcaa----taacgacgatggcgtcgaagagaatggcagaggaaacaacttcgccga 156  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||    ||||||||| |||||| ||||||||||  ||||| |     ||| |||    
T  1086319 cgatgacaaggatgtgggaggagatcgacctttcgagaaatccatcaagacgtaacgacgacggcgtcaaagagaatggtggaggagatgggctcgtcga 1086418  T
Q  157 gagaaaatagaacaaaggtgagcgaaagaggagctgagagagagaaagaat 207  Q
    |||||||||| | || |||||| |||||||||| |||||||||||||||||    
T  1086419 gagaaaatag-ataagggtgagagaaagaggagatgagagagagaaagaat 1086468  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 887 - 961
Target Start/End: Complemental strand, 44663737 - 44663663
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 961  Q
    ||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  44663737 atctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 44663663  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 887 - 961
Target Start/End: Original strand, 35348991 - 35349066
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct-cctattttaggtgccaa 961  Q
    |||||||||||| |||||||||||||||||||||| |||||||   || ||||||||| | ||||||||| |||||    
T  35348991 atctaacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaa 35349066  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1237 - 1291
Target Start/End: Original strand, 19962262 - 19962318
Alignment:
Q  1237 tacccatgcaaactctacagtgccccat--gcttccctcttcttctccctctgtcac 1291  Q
    |||| ||||||||||||||| |||||||  ||||||||||||||||||||| |||||    
T  19962262 taccgatgcaaactctacagagccccatatgcttccctcttcttctccctccgtcac 19962318  T

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Target: scaffold0152 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 887 - 983
Target Start/End: Original strand, 10195 - 10291
Alignment:
Q  887 atctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgcc-aacaaacctcagcccttggatcta 983  Q
    |||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||| || ||||||| ||| ||||| ||| ||||||||||||||    
T  10195 atctaacttattcccaatcctagttaacactccaattaacactccaaaccctaattctacttttttaggcgccaaacaatcct-agcccttggatcta 10291  T

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Target: chr2 (Bit Score: 52; Significance: 4e-20; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 4e-20
Query Start/End: Original strand, 873 - 944
Target Start/End: Original strand, 997806 - 997877
Alignment:
Q  873 atctatctaatctaatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattct 944  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || | || ||||||||||||||    
T  997806 atctatctaatctaatctaacttattcctaatcctagttaacacttcaattagccctgccaaccctaattct 997877  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 886 - 961
Target Start/End: Original strand, 4453777 - 4453852
Alignment:
Q  886 aatctaacttattcctaatcctagttaacactccaaataacactcccaaccctaattctcctattttaggtgccaa 961  Q
    |||||||||||||||||||||||||||||||||||| || ||||   ||||||||||||   |||||||| |||||    
T  4453777 aatctaacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatgattttaggcgccaa 4453852  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000008
Query Start/End: Original strand, 886 - 931
Target Start/End: Original strand, 9208569 - 9208614
Alignment:
Q  886 aatctaacttattcctaatcctagttaacactccaaataacactcc 931  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  9208569 aatctaacttattcctaatcctagttaacactccaattatcactcc 9208614  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 882 - 921
Target Start/End: Original strand, 7161811 - 7161850
Alignment:
Q  882 atctaatctaacttattcctaatcctagttaacactccaa 921  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  7161811 atctaatctaacttatttctaatcctagttaacactccaa 7161850  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 877 - 940
Target Start/End: Original strand, 3625169 - 3625234
Alignment:
Q  877 atctaatctaa--tctaacttattcctaatcctagttaacactccaaataacactcccaaccctaa 940  Q
    |||||||||||  ||||||||||||||||||||| |||||||||||| ||||  | ||||||||||    
T  3625169 atctaatctaacttctaacttattcctaatcctaattaacactccaattaaccatgccaaccctaa 3625234  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 880 - 922
Target Start/End: Original strand, 32608 - 32650
Alignment:
Q  880 taatctaatctaacttattcctaatcctagttaacactccaaa 922  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32608 taatctaatctaacttatttctaatcctagttaacactccaaa 32650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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