View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_15 (Length: 436)
Name: NF18161_low_15
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 35364811 - 35364579
Alignment:
| Q |
19 |
attcctgagaaaatcatcaacacaccacaaccacagaacaacaagaatcaattgatgatcttcgtagatatctttaacattactcaagtaacattgccaa |
118 |
Q |
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| T |
35364811 |
attcctgagaaaatcatcaacacaccacaa-----gaacaacaagaatcaattgatgatcttcgtagatatctctaacattactcaagtaacattgccaa |
35364717 |
T |
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| Q |
119 |
gttaaaagctgagaggtcttaaaccccatgccaccgtagtttttatgcttcgaaaacttctcccaacattcaattgataccacgactattggagccacca |
218 |
Q |
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| T |
35364716 |
gttaaaagctgagaggtcttaaaccccatgccatcgtagtttttatgcttcgaaaacttctcccaacatccaattgataccacgactattggagccacca |
35364617 |
T |
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| Q |
219 |
tactccacgaattcatcattttttctataaatgtaagt |
256 |
Q |
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| T |
35364616 |
tactccacgaattcatcattttttctataaatgtaagt |
35364579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 330 - 429
Target Start/End: Complemental strand, 35364509 - 35364410
Alignment:
| Q |
330 |
cataatgtttcaaataattaagattaagataaatgacaagtaattttgttttctatttaaagtcgtaaatatatttgagaaatgttaatcggtgtctctg |
429 |
Q |
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| T |
35364509 |
cataatgtttcaaataattaagattaagataaatgacaagtaattttgttttctatttaaagtcgtaaatttatttgagaaatgttaacgggtgtctctg |
35364410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 21976307 - 21976398
Alignment:
| Q |
128 |
tgagaggtctt-aaaccccatgccaccgtagtttttatgcttcgaaaacttctccca--acattcaattgataccacgactattggagccac |
216 |
Q |
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| T |
21976307 |
tgagaggtctttaaaccccatgccaccatagtttttatgcattgatagcttctcccatgacatccaattgataccacgactattggtgccac |
21976398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 215
Target Start/End: Original strand, 24409964 - 24410075
Alignment:
| Q |
107 |
taacattgccaagttaaaagctgagaggtc-ttaaaccccatgccaccgtagtttttatgcttcgaaaacttctccca--acattcaattgataccacga |
203 |
Q |
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| T |
24409964 |
taacattgccaagttaaaagtcgattggtccttaacccccatgtcaccatagtttttatgcatagataacttcacccatgacatccaattgatgccacga |
24410063 |
T |
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| Q |
204 |
ctattggagcca |
215 |
Q |
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| T |
24410064 |
ctattggagcca |
24410075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 185
Target Start/End: Complemental strand, 44674297 - 44674234
Alignment:
| Q |
123 |
aaagctgagaggtc-ttaaaccccatgccaccgtagtttttatgcttcgaaaacttctcccaac |
185 |
Q |
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| T |
44674297 |
aaagctgagaggtccttaaaccccatgccaccgtattttttatgcattgataacttttcccaac |
44674234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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