View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_16 (Length: 435)
Name: NF18161_low_16
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 426
Target Start/End: Complemental strand, 33293850 - 33293436
Alignment:
| Q |
18 |
gttaccgtaagtcctttgtttaggccacttggtaccctaagtctttcatcgaataatgaaatcaatggaataaaataagaatgaaaagaaacaccataaa |
117 |
Q |
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| T |
33293850 |
gttaccgtaagtcctttgtttaggccacttggtaccctaagtctttcatcgaataatgaaatcaaaggagtaaaataagaatgaaaagaaacaccataaa |
33293751 |
T |
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| Q |
118 |
tggctaaggtaaattaatcnnnnnnnn-gttgacaaaggtaaattatcaattacttaatagcaaataaaataataaaaacatgtcatagattcaagatta |
216 |
Q |
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| T |
33293750 |
tggctaaggtaaattaatctttttttttgttgacaaaggtaaattatcaattacttaatagcaaataaaataataaaaacatgtcatagattcaagatta |
33293651 |
T |
|
| Q |
217 |
atnnnnnnnnnngacggatcaaagattattacaccttggtaatgaaataaactgaggcaacagtggctttgaaatcagtagccacagtttctaggaagga |
316 |
Q |
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| T |
33293650 |
ataaaaaaaaaagacggatcaaagattattgcaccttggtaatgaaataaactgaggcaacagtggctttgaaatcagtagccacaatttctaggaagga |
33293551 |
T |
|
| Q |
317 |
atgttgaagagaaagggattgatcaacccaca--tataccagcagcgatgatggtg---accgcgatgtcgagcgataacggtgaaaacaaacgttgttt |
411 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33293550 |
atgttgaagagaaagggattgatcaacccacatatataccagcagcgatgatggtgatcaccgcgatgtcgagcgataacggtgaaaacaaacgttgttt |
33293451 |
T |
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| Q |
412 |
tcttcatattcttct |
426 |
Q |
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| T |
33293450 |
tcttcatattcttct |
33293436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 350
Target Start/End: Original strand, 21465768 - 21465858
Alignment:
| Q |
260 |
gaaataaactgaggcaacagtggctttgaaatcagtagccacagtttctaggaaggaatgttgaagagaaagggattgatcaacccacata |
350 |
Q |
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| T |
21465768 |
gaaatcaactgaagcaatattggctttgaaatcagtagctacaatttttcggaaggaaggttgaagagaaagtgattgttcaacccacata |
21465858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 348
Target Start/End: Complemental strand, 46469957 - 46469887
Alignment:
| Q |
278 |
agtggctttgaaatcagtagccacagtttctaggaaggaatgttgaagagaaagggattgatcaacccaca |
348 |
Q |
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| T |
46469957 |
agtggctttataatcagtaaccattgtttctttgaaggaaggttgaagagaaagggtttgatcaacccaca |
46469887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 46543375 - 46543313
Alignment:
| Q |
284 |
tttgaaatcagtagccacagtttctaggaaggaatgttgaagagaaagggattgatcaaccca |
346 |
Q |
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| T |
46543375 |
tttgaaatcagtagcaacagtttctttgaaggaatgttgaaaagtaagtgattgttcaaccca |
46543313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 46478525 - 46478489
Alignment:
| Q |
310 |
ggaaggaatgttgaagagaaagggattgatcaaccca |
346 |
Q |
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|||||||| ||||||||||||||| |||||||||||| |
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| T |
46478525 |
ggaaggaaggttgaagagaaagggtttgatcaaccca |
46478489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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