View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_19 (Length: 417)
Name: NF18161_low_19
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 45265955 - 45265558
Alignment:
| Q |
1 |
caacatcaacaccgtatatacatagttttcgacttctatgttattttctcttctcaattcgaatacagtgtcaacttttatgtgtaaataacacaactca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||| | ||| ||||| | | || ||| |
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| T |
45265955 |
caacatcaacaccgtatatacatagttttcgacttctatattattttctcttctcaattcgcaaacaacacacatccatat-tgtaatttatac---tca |
45265860 |
T |
|
| Q |
101 |
tgtcatgtttttacacacacattgttatgttatgtggttataaaatggcaatcatagtactagctaggtggtggggagacaatgatattttccatttctc |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45265859 |
tgtcatgtggttacacacacattgttatgttatgtggttataaaatggtaatcatagtactagctaggtggtggggagacaatgatattttccatttctc |
45265760 |
T |
|
| Q |
201 |
ttcttgggtgataaagtgcgtggaggacaacatagaattatgactcccacagtcgttaccaatgagctgtatgcatgtcctattttattaatgcaactac |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45265759 |
ttcttgggtgataaagtgcgtgtaggacaacatagaattatgactcccacagtcgttaccaatgagctgtatgcatgtcctattttattaatgcaactac |
45265660 |
T |
|
| Q |
301 |
nnnnnnnnnnnnnnnnnnnnggttgtaaatatcatatgggtcctcctcaatccagaagataacataagctgactcggatcatacacatttttcctcaaat |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45265659 |
---tattattattattatatggttgtaaatatcatatgggtcctcctcaatccagaagataacataagctgactcagatcatacacatttttcctcaaat |
45265563 |
T |
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