View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_21 (Length: 380)
Name: NF18161_low_21
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 11 - 198
Target Start/End: Original strand, 380209 - 380396
Alignment:
| Q |
11 |
cagagacctgttcagtacagcaaggaaatttcaccgtcaatcatattcattgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgatg |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
380209 |
cagagacctgttcagtacagcaaggaaatttcaccgtcaatcatattcattgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgatg |
380308 |
T |
|
| Q |
111 |
aacgtgagcacaaacgctaaaagaggcaagcttggtcatcatttttgtatttctttcctagcaacaaatgatttaacttatggttatc |
198 |
Q |
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||||||| |||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
380309 |
aacgtgatcacaaatgctaaaagaggtaaggttggtcatcatttttgtatttctttcctagcaacaaatgatttaactcatggttatc |
380396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 185 - 363
Target Start/End: Original strand, 382140 - 382319
Alignment:
| Q |
185 |
aacttatggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttg |
284 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
382140 |
aactcatggttatcaatatcttaagatgcatgtgagacatatcttgattcgatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttg |
382239 |
T |
|
| Q |
285 |
ggacatgaatctcatcttgaatctt-attcattatgatgattctcaattcttttttataaaccactacttatacttaatg |
363 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
382240 |
ggacatgaatctcatcttgaatcttgattcattatgatgattctcaattattttttataaaccaccacttatacttaatg |
382319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 6300190 - 6300517
Alignment:
| Q |
11 |
cagagacctgttcagtacagcaaggaaattt-caccgtcaatcatattcattgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgat |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
6300190 |
cagagacctgttcagtagagcaaggaaatttgcaccatcaatcatattcattgatgaacttgatgcggttggtggcaagcgtggaagaggcttcaatgag |
6300289 |
T |
|
| Q |
110 |
gaacgtgagcacaaacgctaaaagaggcaagcttggtcatcatttttgtatttctttcctagcaacaaatgatttaacttatggttatcaatatcttaag |
209 |
Q |
| |
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||||| || ||||||||||| ||||||| || ||||||| |||||||||||||| |||||||||| | ||| |||| || |||||||||||| || |
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| T |
6300290 |
gaacggga--ccaaacgctaaatcaggcaagtttagtcatca-ttttgtatttcttttctagcaacaatttattgaactcatagttatcaatatcatata |
6300386 |
T |
|
| Q |
210 |
atgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatcttgaatctt |
309 |
Q |
| |
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||||||| ||| | |||||| |||| |||||| |||||| | |||| ||| |||||||||||||||| |||||||||||||||||| |||||||| || |
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| T |
6300387 |
atgcatgcgagtcgtatctttattcgatactatactgaactcaatcgatatgaatctctggtgtgtat-tttttgggacatgaatcttgtcttgaatgtt |
6300485 |
T |
|
| Q |
310 |
-attcattatgatgattctcaattctttttta |
340 |
Q |
| |
|
||||||||||||| || | ||||||||||| |
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| T |
6300486 |
gattcattatgatggatcccgattctttttta |
6300517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 6307000 - 6307327
Alignment:
| Q |
11 |
cagagacctgttcagtacagcaaggaaattt-caccgtcaatcatattcattgatgaacttgatgcggttggcagcaagcgtggaagaagcttcaatgat |
109 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
6307000 |
cagagacctgttcagtagagcaaggaaatttgcaccatcaatcatattcattgatgaacttgatgcggttggtggcaagcgtggaagaggcttcaatgag |
6307099 |
T |
|
| Q |
110 |
gaacgtgagcacaaacgctaaaagaggcaagcttggtcatcatttttgtatttctttcctagcaacaaatgatttaacttatggttatcaatatcttaag |
209 |
Q |
| |
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||||| || ||||||||||| ||||||| || ||||||| |||||||||||||| |||||||||| | ||| |||| || |||||||||||| || |
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| T |
6307100 |
gaacggga--ccaaacgctaaatcaggcaagtttagtcatca-ttttgtatttcttttctagcaacaatttattgaactcatagttatcaatatcatata |
6307196 |
T |
|
| Q |
210 |
atgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatcttgaatctt |
309 |
Q |
| |
|
||||||| ||| | |||||| |||| |||||| |||||| | |||| ||| |||||||||||||||| |||||||||||||||||| |||||||| || |
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| T |
6307197 |
atgcatgcgagtcgtatctttattcgatactatactgaactcaatcgatatgaatctctggtgtgtat-tttttgggacatgaatcttgtcttgaatgtt |
6307295 |
T |
|
| Q |
310 |
-attcattatgatgattctcaattctttttta |
340 |
Q |
| |
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||||||||||||| || | ||||||||||| |
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| T |
6307296 |
gattcattatgatggatcccgattctttttta |
6307327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 30864065 - 30863944
Alignment:
| Q |
201 |
tatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatc |
300 |
Q |
| |
|
||||||| ||| |||||||| | ||||| ||||| |||||||| |||| | |||| |||||||||||| |||||||| | ||| |||||||||||||||| |
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| T |
30864065 |
tatcttacgatacatgtgagtcgtatctcgattcaatactaaaatgaactcaatcgatacaaatctctagtgtgtatctattt-ggacatgaatctcatc |
30863967 |
T |
|
| Q |
301 |
ttgaatcttattcattatgatga |
323 |
Q |
| |
|
|| || | |||||| |||||||| |
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| T |
30863966 |
ttcaaccctattcactatgatga |
30863944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 190 - 304
Target Start/End: Complemental strand, 10582457 - 10582343
Alignment:
| Q |
190 |
atggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggaca |
289 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| ||||| |||| || |||| ||||| || ||||| ||| ||||||| |||||||| | ||| | ||| |
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| T |
10582457 |
atggttatcagtatcttatgatacatgtgagtcatatattgactcgatacaaaactatatcaaatcgatatgaatctctagtgtgtatctattttgaaca |
10582358 |
T |
|
| Q |
290 |
tgaatctcatcttga |
304 |
Q |
| |
|
||||||||||||||| |
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|
| T |
10582357 |
tgaatctcatcttga |
10582343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 307
Target Start/End: Original strand, 30035336 - 30035451
Alignment:
| Q |
190 |
atggttatcaatatcttaagatgcatgtgagacatatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggaca |
289 |
Q |
| |
|
|||||||||| ||||||| ||| |||||||| | ||||| |||| ||||| || |||||| |||| ||||||||||| |||| ||| | ||| ||||| |
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|
| T |
30035336 |
atggttatcagtatcttatgatacatgtgagtcgtatctcaattcaatacttaattgaattcaatcgatacaaatctcaagtgtatatctattt-ggaca |
30035434 |
T |
|
| Q |
290 |
tgaatctcatcttgaatc |
307 |
Q |
| |
|
|||||||| ||||||||| |
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| T |
30035435 |
tgaatctc-tcttgaatc |
30035451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 32117394 - 32117446
Alignment:
| Q |
252 |
aatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatcttga |
304 |
Q |
| |
|
|||||||||||||||||||||||||| | ||| | |||| ||||||||||||| |
|
|
| T |
32117394 |
aatcaatacaaatctctggtgtgtatctgttttgaacataaatctcatcttga |
32117446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 8082294 - 8082213
Alignment:
| Q |
224 |
tatcttgattccatactaaactgaattaaatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatcttgaat |
306 |
Q |
| |
|
||||||||||| |||||||| |||| ||| ||||| |||||| |||||||| | ||||| |||||||||||||||||||| |
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|
| T |
8082294 |
tatcttgattcaatactaaattgaacccaattgatacagatctctagtgtgtatctatttgg-acatgaatctcatcttgaat |
8082213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 32117580 - 32117632
Alignment:
| Q |
252 |
aatcaatacaaatctctggtgtgtatatttttgggacatgaatctcatcttga |
304 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | |||| ||||||||||||| |
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|
| T |
32117580 |
aatcaatacaaatctctagtgtgtatctgttttgaacataaatctcatcttga |
32117632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 333
Target Start/End: Complemental strand, 49520060 - 49519982
Alignment:
| Q |
258 |
tacaaatctctggtgtgtatatttttgggacatgaatctcatcttgaat---cttattcattatgatgattctcaattc |
333 |
Q |
| |
|
||||||||||| |||||||| | ||| ||||||||||||||||| |||| | |||||||||||||| ||||||||| |
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|
| T |
49520060 |
tacaaatctctagtgtgtatctattttggacatgaatctcatctcgaatcccccaattcattatgatgaatctcaattc |
49519982 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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