View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_23 (Length: 374)
Name: NF18161_low_23
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 27716816 - 27716456
Alignment:
| Q |
1 |
cctgtgggaggggctgcttgtggaaatcaagctaaa-ccttcacttaaaatgatgctggttgcttcatattctagagattatggagaaagctacattggt |
99 |
Q |
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| T |
27716816 |
cctgtgggaggtgctggttgtggaaattaagctaaaaccttcact-aaaatgatgctgattgcttcatattctagagattaaggagaaagctacattggt |
27716718 |
T |
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| Q |
100 |
tcagcttcaatttaaagaaagctaccatattgtttgttaattatatccttaccgaagaagtaatgaaattagacaattaaggtagcttgcgtttggggtt |
199 |
Q |
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| T |
27716717 |
tcggcttcaatttaaagaaagctaccatattgtttgtaaattatatccttaccgaagaagtaatgaaattagacaattgaggtagcttgcgtttggggtt |
27716618 |
T |
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| Q |
200 |
ta----tgtttgtctctgcatttttacttacattctaagaaaatctatttgtaataactagtagacaaattaggagaaattttttcttacgtaaaaaata |
295 |
Q |
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|| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27716617 |
tatatttggttgtctctgcatttttacttacattctaagaaaatctatttgtattaactagtagacaaattaggagaaattttttcttacgt-aaaaata |
27716519 |
T |
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| Q |
296 |
atgtaaatcaatctgttagagatatgtctacaagggataccacacacaattttagcatgatat |
358 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27716518 |
atgtaaatcaatctgttagagatatgtctacaagggataccacacacaattttagcatgatat |
27716456 |
T |
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