View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18161_low_27 (Length: 358)

Name: NF18161_low_27
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18161_low_27
NF18161_low_27
[»] chr7 (7 HSPs)
chr7 (48-271)||(41620358-41620580)
chr7 (48-205)||(41615741-41615897)
chr7 (302-343)||(41621590-41621631)
chr7 (85-205)||(15999347-15999465)
chr7 (201-252)||(41615926-41615977)
chr7 (120-183)||(6240011-6240074)
chr7 (85-205)||(14585477-14585595)
[»] chr2 (3 HSPs)
chr2 (54-184)||(26312822-26312952)
chr2 (85-184)||(38716537-38716636)
chr2 (50-106)||(34121640-34121696)
[»] chr8 (1 HSPs)
chr8 (48-175)||(27423115-27423241)
[»] chr6 (1 HSPs)
chr6 (54-183)||(29178786-29178915)
[»] chr5 (2 HSPs)
chr5 (115-183)||(9779666-9779734)
chr5 (201-250)||(9779784-9779833)
[»] chr1 (3 HSPs)
chr1 (89-183)||(35880870-35880964)
chr1 (122-180)||(16799058-16799116)
chr1 (113-183)||(25291915-25291985)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 9e-95; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 48 - 271
Target Start/End: Original strand, 41620358 - 41620580
Alignment:
Q  48 atatgctttatttacttctgcattttatgttagtatcttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgat 147  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| || ||    
T  41620358 atatgctttatttacttatgcattttatgttagtatcttagaatcttaaaattttatctctgttgtttgtcattttggatcataaataactaaacttaat 41620457  T
Q  148 atttaaaaatacttagaacttatccacttcaatccttcgttgaattgatactttacttgcactcgatatgtattgaaaataatcaactattttctaagta 247  Q
    ||||||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41620458 atttaaaaatacttgaaacttatccacttcaatcc-tcgttaaattgatactttacttgcactcgatgtgtattgaaaataatcaactattttctaagta 41620556  T
Q  248 tcaatccgtgcctggtattttgtt 271  Q
    |||||| |||||||||||||||||    
T  41620557 tcaatcggtgcctggtattttgtt 41620580  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 48 - 205
Target Start/End: Original strand, 41615741 - 41615897
Alignment:
Q  48 atatgctttatttacttctgcattttatgttagtatcttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgat 147  Q
    ||||||||| ||||||| |||||| ||| ||||||||| |||||||||||||| ||| ||| ||||||||||||||||||  |||||||||||| ||| |    
T  41615741 atatgctttgtttacttgtgcattctattttagtatctaagaatcttaaaattgtatttgtgttgtttgtcattttggatgttaaataactaaacttggt 41615840  T
Q  148 atttaaaaatacttagaacttatccacttcaatccttcgttgaattgatactttactt 205  Q
    ||||  ||||||||| |||| |||||| ||||||| || ||| || ||||||||||||    
T  41615841 atttggaaatacttaaaactaatccacatcaatcc-tcattggatcgatactttactt 41615897  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 343
Target Start/End: Original strand, 41621590 - 41621631
Alignment:
Q  302 tgtttcttgtcagtagctcttagcagtatctcatcttatatt 343  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  41621590 tgtttcttgtgagtagctcttagcagtatctcatcttatatt 41621631  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 15999465 - 15999347
Alignment:
Q  85 ttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcctt 184  Q
    |||| |||||||||| |||||| ||| |||| | | |||||||| |||||||||||| ||   |||| |||||||||| |||||||||| ||| | ||||    
T  15999465 ttagcatcttaaaatcttatctttat-gtttttgactttggatcttaaataactaaacttagcatttgaaaatacttataacttatcca-ttccaacctt 15999368  T
Q  185 cgttgaattgatactttactt 205  Q
    ||| | |||||||||||||||    
T  15999367 cgtgggattgatactttactt 15999347  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 41615926 - 41615977
Alignment:
Q  201 tacttgcactcgatatgtattgaaaataatcaactattttctaagtatcaat 252  Q
    |||||||||| |||||| ||| ||||||||||||||||||||||| ||||||    
T  41615926 tacttgcactagatatgcattcaaaataatcaactattttctaagcatcaat 41615977  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 6240011 - 6240074
Alignment:
Q  120 ttttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcct 183  Q
    ||||||||| ||||||| |||| ||   |||||||||||||||||||||||||||  |||||||    
T  6240011 ttttggatcttaaataattaaacttagcatttaaaaatacttagaacttatccacgacaatcct 6240074  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 205
Target Start/End: Complemental strand, 14585595 - 14585477
Alignment:
Q  85 ttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcctt 184  Q
    |||| |||||||||| |||||| ||| |||| | | |||||||| |||||||||| | ||   |||| |||||||||| |||||||||||| ||| ||||    
T  14585595 ttagcatcttaaaatcttatctttat-gtttttgactttggatcttaaataactatacttagcatttgaaaatacttataacttatccactccaa-cctt 14585498  T
Q  185 cgttgaattgatactttactt 205  Q
     || | || ||||||||||||    
T  14585497 tgtgggatcgatactttactt 14585477  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 26312822 - 26312952
Alignment:
Q  54 tttatttacttctgcattttatgttagtatcttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgatatttaa 153  Q
    ||||||||||| |||||||||  ||| | ||||||||||||||||| |||||| | || ||||| |||||||||| |||||||||||| ||   |||||     
T  26312822 tttatttacttgtgcattttactttaatgtcttagaatcttaaaatcttatctttgttatttgttattttggatcttaaataactaaacttagcatttat 26312921  T
Q  154 aaatacttagaacttatccacttcaatcctt 184  Q
    |||||||| ||||||||  ||||||||||||    
T  26312922 aaatacttggaacttattaacttcaatcctt 26312952  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 85 - 184
Target Start/End: Original strand, 38716537 - 38716636
Alignment:
Q  85 ttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcctt 184  Q
    |||||||| |||||| |||||| | || |||||||||||||||| ||||||||||||  |   |||||||||||||||||| |||| |||| ||||||||    
T  38716537 ttagaatcctaaaatcttatctttgttatttgtcattttggatcttaaataactaaacgtagcatttaaaaatacttagaatttattcactccaatcctt 38716636  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 34121696 - 34121640
Alignment:
Q  50 atgctttatttacttctgcattttatgttagtatcttagaatcttaaaattttatct 106  Q
    ||||||||||||||| |||||||||  ||||| ||||||||||||||||| ||||||    
T  34121696 atgctttatttacttttgcattttactttagtgtcttagaatcttaaaatattatct 34121640  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 27423241 - 27423115
Alignment:
Q  48 atatgctttatttacttctgcattttatgttagtatcttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgat 147  Q
    |||||||||||||||||||| ||||||  ||||| ||||||||||||||||   ||||| || |  || ||| |||||||| | ||||||||||||| |     
T  27423241 atatgctttatttacttctgaattttactttagtgtcttagaatcttaaaacactatctttactaattatcactttggatcttgaataactaaattt-ag 27423143  T
Q  148 atttaaaaatacttagaacttatccact 175  Q
    |||| |||||| |||||| |||||||||    
T  27423142 atttgaaaatatttagaatttatccact 27423115  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 183
Target Start/End: Complemental strand, 29178915 - 29178786
Alignment:
Q  54 tttatttacttctgcattttatgttagtatcttagaatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgatatttaa 153  Q
    |||||||| |||||||||||   ||||| |||||||| |  ||||| || ||| | |||||| ||||||||||   ||| || ||||| ||  ||||| |    
T  29178915 tttatttaattctgcattttcctttagtgtcttagaacccaaaaatattgtctttgttgtttatcattttggacattaactacctaaacttagtatttga 29178816  T
Q  154 aaatacttagaacttatccacttcaatcct 183  Q
    ||||||||||||||||||||||||||||||    
T  29178815 aaatacttagaacttatccacttcaatcct 29178786  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 9779666 - 9779734
Alignment:
Q  115 tgtcattttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcct 183  Q
    ||||| |||||||| |||||||||||| || ||||||||||||  ||| ||||||||||| ||||||||    
T  9779666 tgtcactttggatcttaaataactaaacttaatatttaaaaatgattaaaacttatccacatcaatcct 9779734  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 9779784 - 9779833
Alignment:
Q  201 tacttgcactcgatatgtattgaaaataatcaactattttctaagtatca 250  Q
    ||||| ||||| ||||| ||||||||||| ||||||||||||||| ||||    
T  9779784 tacttacactcaatatgcattgaaaataaacaactattttctaagcatca 9779833  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 183
Target Start/End: Complemental strand, 35880964 - 35880870
Alignment:
Q  89 aatcttaaaattttatctgtattgtttgtcattttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcct 183  Q
    ||||||||||| |||| | | || ||||||||||||     |||||||||||| || ||||||||||||||| ||||||| || |||||||||||    
T  35880964 aatcttaaaatcttattttttttatttgtcattttgatatttaaataactaaacttcatatttaaaaatactaagaacttgtcaacttcaatcct 35880870  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 180
Target Start/End: Complemental strand, 16799116 - 16799058
Alignment:
Q  122 ttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaat 180  Q
    ||||||| |||||||||||| ||   |||| ||||||||||||||||||||||| ||||    
T  16799116 ttggatcttaaataactaaacttaccatttgaaaatacttagaacttatccactacaat 16799058  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 25291915 - 25291985
Alignment:
Q  113 tttgtcattttggatcataaataactaaatttgatatttaaaaatacttagaacttatccacttcaatcct 183  Q
    |||||||||||||||| |||||||||||| ||  ||||| |||||||||| ||  | |||||| |||||||    
T  25291915 tttgtcattttggatcttaaataactaaacttagtatttgaaaatacttaaaatctgtccactccaatcct 25291985  T

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