View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_28 (Length: 354)
Name: NF18161_low_28
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 338
Target Start/End: Original strand, 43741702 - 43742026
Alignment:
| Q |
14 |
gaatgccgtccaaagtcacacactcatatggaaatatcaattggactttcaaagcattaacgaaaacgtgctctttcgtgctgacaacttcgcttttgag |
113 |
Q |
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| T |
43741702 |
gaatgccgtccaaagtcacacattcatatggaaatatcaattggactttcaaagcattaacgacaacgtgctctttcgtgctgacaacttcgcttttgag |
43741801 |
T |
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| Q |
114 |
ttcaacaaatacaattatcgctcaaagtttaaaccaactgatatggtgaaagagtgtgggatatgtcctctttataccaaagaaaaggatcataatggtg |
213 |
Q |
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| T |
43741802 |
ttcaacaaatacaattatcgctcaaagtttaaaccaactgatatggtgaaagagtgcgggatatgtcctctttataccaaagaaaaggatcataatggtg |
43741901 |
T |
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| Q |
214 |
tgaaatatttaaatgacattgaagaacccagtaggagcaatgcttcatagtgtgtttgtatggggggnnnnnnngaagaagaagatggagtgcaagccct |
313 |
Q |
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| T |
43741902 |
tgaaatatttaaatgacattgaagaacccagtaggagcaatgcttcatagtgtgtttgtatggggggaaaaaaagaagaagaagatggagtgcaagccct |
43742001 |
T |
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| Q |
314 |
ttggaggttacatgtaagtaaatat |
338 |
Q |
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|||| ||| |||||||||||||||| |
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| T |
43742002 |
ttggtggtcacatgtaagtaaatat |
43742026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 37933161 - 37933215
Alignment:
| Q |
158 |
ggtgaaagagtgtgggatatgtcctctttataccaaagaaaaggatcataatggt |
212 |
Q |
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| T |
37933161 |
ggtgaaagagtgtggaatatgtcctctgtataccaaataaaatgatgataatggt |
37933215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 19874094 - 19874052
Alignment:
| Q |
156 |
atggtgaaagagtgtgggatatgtcctctttataccaaagaaa |
198 |
Q |
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| T |
19874094 |
atggtgaaagagtgtggaatatgtcctctttatactaaagaaa |
19874052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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