View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18161_low_3 (Length: 774)
Name: NF18161_low_3
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 17782950 - 17783300
Alignment:
| Q |
18 |
tgaagaaggggtcaaggaaggttttaatgagcaattccacttcttcaatggcgaaacactaggactcctcgacattgtggtagctgcgacttcttgcacc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17782950 |
tgaagaaggggtcaaggaaggttttaatgagaaattccacttcttcaacggcgaaacactaggactcctcgacattgtggtagctgcgacttcttgcacc |
17783049 |
T |
|
| Q |
118 |
tacgaagcatttcaggagtcctgtgagatagaggtcttcacacccgaaaagatgccgaaatttttcatgtgggtgaataacttgaaggaacatcccctgg |
217 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17783050 |
tacgaagcatttcaggaggcctgtgagatagaggtcttcacacccgaaaagatgccgaaatttttcatttgggtgaataacttgaaggaacatcccctgg |
17783149 |
T |
|
| Q |
218 |
tgaaggagacacttcctcctcatgagaagttggttgccaaactgaaaagcattattggaacatgaatttagaagcactgaatatgaatactttattctcc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
17783150 |
tgaaggagacacttcctcctcatgagaagttggttgccaaactgaaaagcattattggaacatgaatttagaagcactgaatattaatactttattctcc |
17783249 |
T |
|
| Q |
318 |
ttatgctgctaaataaagtaactggatttttatctaatttactatttgcta |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17783250 |
ttatgctgctaaataaagtaactggatttttatgtaatttactatttgcta |
17783300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 450 - 562
Target Start/End: Original strand, 17783382 - 17783494
Alignment:
| Q |
450 |
ggtgtatgcatttccttttgaggttccacttatatacgacgtccgttgcttgtagtttctgtcttacccgtccctggtcgtcttgtgcatagacttttat |
549 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
17783382 |
ggtgtatgcattttcttttgaggttccacttatgtacgacgtccgttgcttgtagtttctgtcttacccgtccctggtcgtcttgtgcatggacttttat |
17783481 |
T |
|
| Q |
550 |
taataaaatttgc |
562 |
Q |
| |
|
||||||||||||| |
|
|
| T |
17783482 |
taataaaatttgc |
17783494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University