View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18161_low_31 (Length: 334)
Name: NF18161_low_31
Description: NF18161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18161_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 187 - 318
Target Start/End: Original strand, 45647139 - 45647270
Alignment:
| Q |
187 |
caaaacaaagtttcacacgaatgattcgaacacaactcctaatgaaatttaagttgatttcttaaaatatagaccaatctatgttcactatactgttgta |
286 |
Q |
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| T |
45647139 |
caaaacaaagtttcacacgaatgattcgaacacaactcctaatgaaatttaagttgatttcttaaaatctagaccaatctatgttcgctatactgttgta |
45647238 |
T |
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| Q |
287 |
tttattttatcaactactcgaatatgcatact |
318 |
Q |
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| T |
45647239 |
tttattttatcaactactcgaatatgcatact |
45647270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 45646874 - 45646977
Alignment:
| Q |
8 |
aagcataggaaatcaaattgccatgattttaagaagttccttnnnnnnnn-tgtttttaagaagtaaaaataagataaattgaagcgtatagctacctac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45646874 |
aagcataggaaatcaaattgccatgattttaagaagttccttaaaaaaaaatgtttttaagaagtaaaaataagataaattgaagcgtatagctatctac |
45646973 |
T |
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| Q |
107 |
aagt |
110 |
Q |
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|||| |
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| T |
45646974 |
aagt |
45646977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 45647057 - 45647122
Alignment:
| Q |
129 |
ttttgtgcaatataagcatagaaaatctttcatgttaagaatgacgtgaccgtgtgaccaaaacaa |
194 |
Q |
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| T |
45647057 |
ttttgtgcaatataagcatagaaaatctttcatgttaagaatgatgtgaccgtgtgaccaaaacaa |
45647122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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